Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe02g00566 | ATGTCCTTGTCAGCTGTGAAATATATTTACTGTGTTTTATGTCAAGTTGCTAATAATTTTCATCATTTTTCCCTTTGCAGGGGCTATGTTGGGATTCACAGTTCGGGTTTTAGGGACTTCCTTTTGAAGCCAGAACTTCTACGTGCTATTGTGGATTCTGGATTTGAGCATCCTTCGGAAGGCAAATTTCCTATTCAACATGAATGTATTCCTCAAGCTATCCTGGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGAAAAACTGCTGTGTTTGTTCTGTCATCTCTTCAACAAATTGATCCAGTGCCAGGTCAAGTTTCTGCTCTTGTTCTGTGCCATACGAGGGAGTTAGCATATCAGATTTGTCACGAGTTTGAAAGATTCAGCACATACCTGGTTGATCTTAAGGTTGCTGTCTTCTATGGAGGCGTGAGTATCAAAATTCATAAGGATTTGCTTAAAAATGAATGCCCACATATTGTTGTCGGAACACCAGGGAGAATATTGGCTCTGGCAAGAGATAAGGATCTTTCTTTAAAGAATGTTAGGCATTTTATCCTGGACGAGTGTGACAAAATGCTCGAGTCTCTTGACATGAGAAGAGATGTCCAGGAGATTTTCAAGATGACTCCACACGATAAACAAGTAATGATGTTTTCTGCCACCCTAAGCAAAGAGATCCGCCCAGTTTGTCAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGATGATGAAGCAAAGTTGACCTTGCATGGTCTTGTTCAGCACTACATCAAGTTAACTGAGATGGAGAAAAACCGCAAGTTGAATGATCTACTTGATGCATTGGACTTTAATCAAGTCGTTATTTTTGTCAAAAGTGTAAGCAGAGCTGCAGAGTTGGACAAGTTACTCGTGGAATGTAATTTCCCTTCAATATGCATCCATTCAGGCATGCCTCAGGAAGAAAGGTTGACAAGGTACAAAGGTTTTAAGGAGGGACATAAGAGGATTCTTGTCGCCACAGATTTAGTGGGTAGGGGCATTGACATTGAGCGAGTGAACATTGTCATCAATTATGACATGCCGGATTCTGCTGATACGTACCTGCATAGGGTTGGGAGGGCTGGTAGGTTTGGTACCAAAGGCCTAGCAATAACATTTGTGTCATCTGCTGCTGATTCAGATATTCTCAATAATGTTCAAGAAAGGTTTGACGCAGATATCCAGGTCCTTCCAGAGCAGATTGATACCTCGACATACAGTAAGTTGTATCAAACATGTTGA | 1275 | 40.86 | MSLSAVKYIYCVLCQVANNFHHFSLCRGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFPIQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLVDLKVAVFYGGVSIKIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDILNNVQERFDADIQVLPEQIDTSTYSKLYQTC | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3649909 | 3652703 | + | Bpe008408.1 | Bpe02g00566 | 98715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe02g00566 | 424 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 | 19 | 415 | - | - | |
Bpe02g00566 | 424 | Pfam | Helicase conserved C-terminal domain | 269 | 376 | IPR001650 | - | |
Bpe02g00566 | 424 | Gene3D | - | 252 | 419 | IPR027417 | - | |
Bpe02g00566 | 424 | SMART | ultradead3 | 58 | 259 | IPR014001 | - | |
Bpe02g00566 | 424 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 271 | 416 | IPR001650 | - | |
Bpe02g00566 | 424 | Pfam | DEAD/DEAH box helicase | 63 | 229 | IPR011545 | GO:0003676|GO:0005524 | |
Bpe02g00566 | 424 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 19 | 415 | - | - | |
Bpe02g00566 | 424 | SMART | helicmild6 | 295 | 376 | IPR001650 | - | |
Bpe02g00566 | 424 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 243 | IPR014001 | - | |
Bpe02g00566 | 424 | CDD | DEADc_DDX39 | 34 | 245 | - | - | |
Bpe02g00566 | 424 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 108 | 388 | IPR027417 | - | |
Bpe02g00566 | 424 | CDD | SF2_C_DEAD | 256 | 385 | - | - | |
Bpe02g00566 | 424 | Gene3D | - | 31 | 251 | IPR027417 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe02g00566 | Bpe14g00578 | CCT | |
Bpe02g00566 | Bpe04g00053 | CCT | |
Bpe02g00566 | Bpe02g01244 | ECH | |
Bpe02g00566 | Bpe14g00578 | ECH | |
Bpe02g00566 | Bpe04g00053 | ECH | |
Bpe02g01244 | Bpe02g00566 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g00566 | Bpe-Chr2:3649909 | Bpe13g00955 | Bpe-Chr13:15429694 | 3.28E-81 | dispersed | |
Bpe14g00578 | Bpe-Chr14:4889532 | Bpe02g00566 | Bpe-Chr2:3649909 | 0 | wgd | |
Bpe02g00566 | Bpe-Chr2:3649909 | Bpe02g01244 | Bpe-Chr2:15989367 | 0 | wgd | |
Bpe02g00566 | Bpe-Chr2:3649909 | Bpe04g00053 | Bpe-Chr4:464387 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe02g00566 | K12812 | - | csv:101217346 | 742.265 |