Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00566 ATGTCCTTGTCAGCTGTGAAATATATTTACTGTGTTTTATGTCAAGTTGCTAATAATTTTCATCATTTTTCCCTTTGCAGGGGCTATGTTGGGATTCACAGTTCGGGTTTTAGGGACTTCCTTTTGAAGCCAGAACTTCTACGTGCTATTGTGGATTCTGGATTTGAGCATCCTTCGGAAGGCAAATTTCCTATTCAACATGAATGTATTCCTCAAGCTATCCTGGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGAAAAACTGCTGTGTTTGTTCTGTCATCTCTTCAACAAATTGATCCAGTGCCAGGTCAAGTTTCTGCTCTTGTTCTGTGCCATACGAGGGAGTTAGCATATCAGATTTGTCACGAGTTTGAAAGATTCAGCACATACCTGGTTGATCTTAAGGTTGCTGTCTTCTATGGAGGCGTGAGTATCAAAATTCATAAGGATTTGCTTAAAAATGAATGCCCACATATTGTTGTCGGAACACCAGGGAGAATATTGGCTCTGGCAAGAGATAAGGATCTTTCTTTAAAGAATGTTAGGCATTTTATCCTGGACGAGTGTGACAAAATGCTCGAGTCTCTTGACATGAGAAGAGATGTCCAGGAGATTTTCAAGATGACTCCACACGATAAACAAGTAATGATGTTTTCTGCCACCCTAAGCAAAGAGATCCGCCCAGTTTGTCAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGATGATGAAGCAAAGTTGACCTTGCATGGTCTTGTTCAGCACTACATCAAGTTAACTGAGATGGAGAAAAACCGCAAGTTGAATGATCTACTTGATGCATTGGACTTTAATCAAGTCGTTATTTTTGTCAAAAGTGTAAGCAGAGCTGCAGAGTTGGACAAGTTACTCGTGGAATGTAATTTCCCTTCAATATGCATCCATTCAGGCATGCCTCAGGAAGAAAGGTTGACAAGGTACAAAGGTTTTAAGGAGGGACATAAGAGGATTCTTGTCGCCACAGATTTAGTGGGTAGGGGCATTGACATTGAGCGAGTGAACATTGTCATCAATTATGACATGCCGGATTCTGCTGATACGTACCTGCATAGGGTTGGGAGGGCTGGTAGGTTTGGTACCAAAGGCCTAGCAATAACATTTGTGTCATCTGCTGCTGATTCAGATATTCTCAATAATGTTCAAGAAAGGTTTGACGCAGATATCCAGGTCCTTCCAGAGCAGATTGATACCTCGACATACAGTAAGTTGTATCAAACATGTTGA 1275 40.86 MSLSAVKYIYCVLCQVANNFHHFSLCRGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFPIQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLVDLKVAVFYGGVSIKIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDILNNVQERFDADIQVLPEQIDTSTYSKLYQTC 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3649909 3652703 + Bpe008408.1 Bpe02g00566 98715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00566 424 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 19 415 - -
Bpe02g00566 424 Pfam Helicase conserved C-terminal domain 269 376 IPR001650 -
Bpe02g00566 424 Gene3D - 252 419 IPR027417 -
Bpe02g00566 424 SMART ultradead3 58 259 IPR014001 -
Bpe02g00566 424 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 416 IPR001650 -
Bpe02g00566 424 Pfam DEAD/DEAH box helicase 63 229 IPR011545 GO:0003676|GO:0005524
Bpe02g00566 424 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 415 - -
Bpe02g00566 424 SMART helicmild6 295 376 IPR001650 -
Bpe02g00566 424 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 243 IPR014001 -
Bpe02g00566 424 CDD DEADc_DDX39 34 245 - -
Bpe02g00566 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 388 IPR027417 -
Bpe02g00566 424 CDD SF2_C_DEAD 256 385 - -
Bpe02g00566 424 Gene3D - 31 251 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00566 Bpe14g00578 CCT
Bpe02g00566 Bpe04g00053 CCT
Bpe02g00566 Bpe02g01244 ECH
Bpe02g00566 Bpe14g00578 ECH
Bpe02g00566 Bpe04g00053 ECH
Bpe02g01244 Bpe02g00566 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00566 Bpe-Chr2:3649909 Bpe13g00955 Bpe-Chr13:15429694 3.28E-81 dispersed
Bpe14g00578 Bpe-Chr14:4889532 Bpe02g00566 Bpe-Chr2:3649909 0 wgd
Bpe02g00566 Bpe-Chr2:3649909 Bpe02g01244 Bpe-Chr2:15989367 0 wgd
Bpe02g00566 Bpe-Chr2:3649909 Bpe04g00053 Bpe-Chr4:464387 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00566 K12812 - csv:101217346 742.265