Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00578 ATGCGGGAAGAAAATTTAGGGTTCAGGCAAGGAAACGATAGTGGGTTTGAACCATCTTTTCTCAATCCAAGAGCTCCGCCTTTTAATCAGAATCATGGGCTCCGGAGACCTTCACTTTACAGTCAGAGACCACAATATTGGCAACCTCGCCCTTTTGTTCCAAACCAACAACTTCCCCCGTTTGATCATAATCGTGGCGTCCGGACCACCCATCAATTTCTGCCGCGCTTTCCTAAGCCTCTGGATTTCCGTTATTGGGAATACGCAAAAATCCCACCACCACCCGATTCTGAGCGCTTCACTATACTTTCTTATAACATCTTAGCTGATTACCTTGCTATCAACCATCGAAGCAAACTGTACTTTCACATTCCACATTATATGATGGAGTGGGGGTGGAGAAAGAGAAATATAAATTTTGAGCTTGGATTATGGTCGGCTGACATTATGTGCTTTCAGGAGGTTGACAGATTTACAGACTTAGAGGAAGAGTTGAGTGTTCGTGGATACAATGGCATTTGGAAGATGCGCACTGGAACTCCAACTGATGGCTGCGCAACTTTTTGGCATACATCAAGATTCAAGCTACTGCATGAGGAATCCATTGAGTTCAATAAGTTTGGACTTCGTGATAATGTTGCACAGATTTCTTACATATTTACGTTGTTATTAAAATTTATCAATTTCTGTTTCAACAGTTTGCAAAGGCCCAACAGGGTTGTTACATGTAATATACATGTCCTTTACAATCCCAAAAGAGGTGAAATTAAGCTTGGTCAGATCAGGATTCTTCTGAGTAAGGCTCATGCTGTTTCAAAACTATGGAATGATGCTCCAATCGTACTTTGTGGGGATTTTAATTGTACTCCTAAGAGTGCCCTATACAACTTTATCTCTGACCGAAAGTTGGATATATCTGGTTTAGACAGAGATAAGTTATCTGGACAAGCCTCTGCTGAAATCCTTGAGCCTGGATATAATTCAACTCAACCTGAAGATTCGAAGGAAGTTAATTGTGGTGATTGTCTCTTAGACAACAAAAAAAATTCGGGTAACAGGGGAAACAGTCTTCCATCAATGATAAACTCTCTCCCCACATGGTCTAATGGTGTCCAGAATGTTGATACTGTTCCACAAGATGCAGTGAAGGCAGAAAGTCAGAGTTATACTACAAATGCCTGCAAGGATGAAAGTGACTCATCTGTTTGTAGTCTAGATGAAAGCCATAGGGAAGGTTCAAACTCTTCCTTTGCTGAAGCAAAGTTTCCTGATCGAGATAATAACCTTGGAAAATGTTCAAACAGTTCTAATGGGGAAGGCAAGTTTTCCATTCACCACATAAATGATACAGTTCATGAAGTGAATCCTTCAGAACTGATATATGCTGAAAAATTTTACACCAACTTGACTGAAGGGAAATCTGGAGTTACAGTTGATACCGCGCGCATTTCAAATACAGGTGATGAGTGCTTTGAATCAAATATGGATATAGTAGACGAACACCTTTCTGAGGTCAGGATTCATCCAGAAACTGCAAATTCCTTCACCTCAACAATTTCTTGTCCTGAACTTTCCAGCCAAAGCTCTTTTTCTGACCATGTAAAACCGTCAAGTCCAGGAAGGCCACAAAATTTGTCTTCTCATCTTACTAATGAATCTGAAAAGGGAAGCTCTTCAACCTTTTGTATGGATAACGCTTCAAGTGCATCTATTAGCATCGACTTTTGGGGGAATGAAAAACTGGAGAATTCCTGTCTTAAGAATCTAGTCAGCAACCCAGCTGATGAAGGAATAGCTGAAGATGACAGCACATTCTTTTCAGCATTACATAATGCTGAAGATCCTTTCTCCTATAAACTTGAAGCTGATAGCACCCAGGATTTTGACCTTGTTTCTCATGAGTCACTGTTGCATGAACCATTGGGAGGGGTAAGCTCTGAAACAATCTATGATCCATCATTGTGGACTCCGATGGATGTAGAAACTGCTACAGGAAGTTCAGATTGTACCGTTTTGGAACATTCTCTTAAGCTTAGAAGCAGTTATGCTGAAGTTGAGGATTTCTCAGGGTCCAGAGACAAGAACGGAGAGCCCCTAGTGACGAGTTACAATAGGTGTTTTTTGGGAACAGTTGATTACATATGGCGGTCTGAAGGTCTCCAGACTGTCAAGGTCCTTGCTCCTATACCTAAACATGCCATGCAATGGACTCCAGGCTTTCCAACAAAGAAATGGGGGAGTGATCACATTGCTTTGGTTTCTGAGCTAGCATTTATGAATGAGGCCATCAATAAAACAGAGAGTTAA 2307 41.09 MREENLGFRQGNDSGFEPSFLNPRAPPFNQNHGLRRPSLYSQRPQYWQPRPFVPNQQLPPFDHNRGVRTTHQFLPRFPKPLDFRYWEYAKIPPPPDSERFTILSYNILADYLAINHRSKLYFHIPHYMMEWGWRKRNINFELGLWSADIMCFQEVDRFTDLEEELSVRGYNGIWKMRTGTPTDGCATFWHTSRFKLLHEESIEFNKFGLRDNVAQISYIFTLLLKFINFCFNSLQRPNRVVTCNIHVLYNPKRGEIKLGQIRILLSKAHAVSKLWNDAPIVLCGDFNCTPKSALYNFISDRKLDISGLDRDKLSGQASAEILEPGYNSTQPEDSKEVNCGDCLLDNKKNSGNRGNSLPSMINSLPTWSNGVQNVDTVPQDAVKAESQSYTTNACKDESDSSVCSLDESHREGSNSSFAEAKFPDRDNNLGKCSNSSNGEGKFSIHHINDTVHEVNPSELIYAEKFYTNLTEGKSGVTVDTARISNTGDECFESNMDIVDEHLSEVRIHPETANSFTSTISCPELSSQSSFSDHVKPSSPGRPQNLSSHLTNESEKGSSSTFCMDNASSASISIDFWGNEKLENSCLKNLVSNPADEGIAEDDSTFFSALHNAEDPFSYKLEADSTQDFDLVSHESLLHEPLGGVSSETIYDPSLWTPMDVETATGSSDCTVLEHSLKLRSSYAEVEDFSGSRDKNGEPLVTSYNRCFLGTVDYIWRSEGLQTVKVLAPIPKHAMQWTPGFPTKKWGSDHIALVSELAFMNEAINKTES 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3730633 3737414 - Bpe008420.1 Bpe02g00578 98727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00578 768 MobiDBLite consensus disorder prediction 1 35 - -
Bpe02g00578 768 Pfam Endonuclease/Exonuclease/phosphatase family 141 306 IPR005135 GO:0003824
Bpe02g00578 768 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 2 759 - -
Bpe02g00578 768 SUPERFAMILY DNase I-like 88 305 IPR036691 -
Bpe02g00578 768 Gene3D Endonuclease/exonuclease/phosphatase 602 767 IPR036691 -
Bpe02g00578 768 Gene3D Endonuclease/exonuclease/phosphatase 75 372 IPR036691 -
Bpe02g00578 768 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 2 759 - -
Bpe02g00578 768 MobiDBLite consensus disorder prediction 526 560 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00578 - - - pmum:103320052 660.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00578 Bpe-Chr2:3730633 Bpe12g00687 Bpe-Chr12:12450217 2.62E-11 dispersed
Bpe02g00578 Bpe-Chr2:3730633 Bpe04g00600 Bpe-Chr4:3834408 8.53E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g410 . . . . . Bpe02g00578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe02g00464 Bhi09g02274 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009856 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00578 Bpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.414431 0.0 1.094308 0.698888 1.419125