Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00609 ATGGCCGCTTCTGTTAACGCGAGCTTGGGTGCTGCGTGTTTTCTGCATTTGCCTCGGACTTTTACTGGAACAAGGACAATGTTTACTTTCAGACCGTTTGTCTCCAGAGTGTCTTCTCATCCTCTTCACAATCGTAGAGATATGAAGCTGATCGTTAGAGCCGCCCGAACGGAATCCATAAAATTTTCGTTGGGCTTCAAGGCTCCCAATTTTGAGCTTTCGGAGCCTCTGACTGGGAAAATATGGAAACTGGATGATTTTGAACCATACCCAGCTTTACTGGTTATGTTTATTTGCAACCATTGCCCATTTGTTATGCACTTGAAAAAAGATATTGTAAAGCTTGCAAACTTTTATATGGAGAGAGGACTTGCCGTCGTAGCTATATCTTCAAATTCTGTTGCTACATATCCGCAGGATGGACCTCAGTGCATGGCAGAAGATGCTAAAGAATTTAACTATCCCTTTCCTTACCTCTATGATGAGTCACAGGATGTTGCTCGAGATTTTGGAGCAGTTTGCACTCCAGAGTTTTTCCTTTTCAAAAAGGATGAGTCATCTCTGATCTGGATTTCAGGTGGTGGTGAAAAAATTCTGAAGCTTGCTTCTGCATGTAGAATAATTCCTGGACAGCGAACTGCTGTTTTTCAACGATATCTGCCCCCTGAAAAGGATTATTTGTCTTTTTCTCTTATAAACAACAATGGAAAGCGGTCCCTTGATTTGATTTGCAAGGATAAAGTTGAAGCAGAGGTTTGGATTGCAGGGCTCCAAGCATTAATAACATTTGGTCAAGGTGGGCGTTCAAAAATTGATGGATGGAATGACGGAGGCCCATACCTCGATGAAAGTGATATAACTTCAAACAGCCCGAGTAATTGTTCAAATAGCGTCAATAGAGATATTAGCTCTCCTGAAGCCTGTGCCAATTTCAACCCAAATAAATCTCCTAAGAGTACTAAGCCTGAGAATTCTTTGCTTTCTGAAAGGTCACATGCAGTTTCAAACCAGACAAATATGCAAGGAAAAGGATCCAGTTCAGATGCCTTTCATGATAGTTTTTCAAGTGCTCCAAGCACATCTAGTCATGGTTCTGTGCCAGATGAGTATGAGGCTCTGGGGGATGTATACATATGGGGAGAGGTTATTAATGATAATGTTGGGAAGTTTGCAGGAGAACAAAATTCTAATTGTGTGGGGCTAAGGACTGACGTACTTTTCCCCAGGCTGTTAGAATCCAATGTTGTTTTAGACGTAGTTCATATAGCTTGTGGAGCCAGGCATGCCACCCTAGTCACTAGGCAAGGCGACGCTTTCACATGGGGTGAGGAATCTGGTGGAAGGCTTGGGCATGGTGTTAGGAAGGATTACATTCAACCTCATCTAGTTGAATCTTTAGCAGCGACTAATGTTTATTTTGTTGCATGTGGGGAGTTTCATTCTTGTGCTGTTACAATGGATGGGGAACTTTACACATGGGGAGATGGTACTCACAATGCTGGGCTTCTCGGCCATGGCACTGATGTGAGCCATTGGATGCCAAAGCGTGTTGCAGGCCCTCTTGAGGGGCTTCCAGTCGCTTCAGTGGCATGTGGCACATGGCATACAGCTTTGGTGACATCGATGGGACAGCTTTTCACATTTGGCGATGGTACTTTCGGAGTGTTGGGCCATGGAGATAGAGAAAGTGTTTCATGTCCAAGAGAAGTCGAGTCTTTATCGGGGCTGAGAACGATTGCAGTCGCATGTGGAGTGTGGCATACAGCGGCGGTAGTAGAAGTTATTGTGACACACTCTGTTATTGTGACACACTCTAGTACAAGTGTTTCATCAGGTAAACTATTCACTTGGGGCGATGGAGATAAAAATAGATTAGGGCAGGGTGATAAGGACCCTCGGCTGAAGCCTACATGTGTACCTGCATTAATCGATTACAACTTTAGTAAAATCTCTTGTGGGCATAGTTTAACAGTTGGCTTGACCATATCTGGGCAAGTATTCACTCTGGGGAGTCCTGTATACGGTCAACTTGGGAATCCACAGGCTGATGGAAAGCAACCATCCTTGGTAAGAGATGAGCTTTTTGGGAAGGCCGTTGAGGAAGTGGCTTGTGGGGCTTACCATGTGGCAGTGCTAACTTCCAAAAATGAGGTTTATACTTGGGGAAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGCAAAGCTCCAACTCTAGTAGAGACCTTGAAGGATAGGCATGCGAAACATATTGCTTGTGGGTCAAACTACACGACTGCAATTTGTCTTCATAAATGGGTATCAGGGGATGAGCAGGCACAATGCTCTGCTTGCAGACAAGCTTTTGGCTTTGCACGAAAGAGGCACAACTGCTATAACTGTGGCCTTGTCCACTGCCATTCATGCAGTTCCAAAAAAGCCCACAGTGCTGCTCTAGCTTCTAACCCAAGCAAACCGAATCGAGTGTGTGATTCTTGTTATTCTAAATTGATCAAAATGTCTGATACTAATATTAATAATAGGAGAGGTGCTATACCTCGCCTCTCTGGTGAAAACAAAGACAGGTTAGAAAAGGGTGAGATAAGATTGTTGAAGTCTGTGCCTTCTAACATGGAATTAATCGAGCTATTAGATAATAAAGCAGCCAAACATGGACGGAAGGCTGATACCTCCTCCCTTGGCAGCAGGTATCAAGCACCTTCCCTATTGCAGCTCAAAGAAGCTGTTTTGGCAACTTCTATTGAGTTTCAACGACCAGCTTTGAAGCTTGCTCTTATGAATTCTGTAGTGAGTTCAAGATCTGTTTCACCTTTCTATAGGAGACCAAGTCCACCACGCTCTGCTACACCTGTTCCAACAGTATCTGGACTTTCTTTCTCTAATAGTATGACCGATAGTTTGACGAAAACCAACGAACTATTGAATCAGGAGGTTGTCAAGTTACGTGCTCAGGTTGAGAGCCTCAAACAGAAGTGTGAACTTGAAGAACTGGAAATTCGGAAAACAGTAAAGAAAACACAAGAAGCATTGTCATTGGCTGCAGAAGAATCTACAAAATCTAAAGCAGCCAAAGAAGTTATTATGTCTCTTACAGCTCAGCTTAAAAACCTCGCCATGAGACTACCCTCTGGAAGTTATGACTTAGAGAGCATGAGAGTAGTACATCTTCCAAATGGTTCAGATCTGAATGGCACTCATCATTCAGATGCAATTAGAGAACGATATTCAAGACCCAATTCTCTTACTTCCATTTCCTTGGCTTCTCCGAGAACAAGTGCCTCTGCCTCTGCCTCTGTAAAGGGATTTCAAGGTCAAGCTCATTCGTTTCAGGAAGAACCTGGCACTGAAACTACCTGGCAGGAGGAGCATGCCAAATTTAGGCTGTCAAATGGTGGTTGTGGAGGTCCTCTGAGTAATGGTAGTGTGTCAGAGGCCGTTGATGAAAACAAAGAAAGATCCAATAATGCTGATTTAGCTGCCAATTCAAATCAAGTAGAGGCTGAATGGATTGAACAATATGAACCTGGTGTATATATTACTCTTGTGGCATTGCGTGATGGAACGAGAGATCTTAAGCGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGAATCAAGCTGAGAATTGGTGGTCAGAAAACCGAAGAAGGGTGTACGAGAAATACAATATCCATGGGTTAGACAAGTCCCCAGTTTCCAGGCAGCATACACGAAGATCAGATAGGCCTACCTCTCCTGCTTCTTCTATACCAACAACATAA 3768 43.74 MAASVNASLGAACFLHLPRTFTGTRTMFTFRPFVSRVSSHPLHNRRDMKLIVRAARTESIKFSLGFKAPNFELSEPLTGKIWKLDDFEPYPALLVMFICNHCPFVMHLKKDIVKLANFYMERGLAVVAISSNSVATYPQDGPQCMAEDAKEFNYPFPYLYDESQDVARDFGAVCTPEFFLFKKDESSLIWISGGGEKILKLASACRIIPGQRTAVFQRYLPPEKDYLSFSLINNNGKRSLDLICKDKVEAEVWIAGLQALITFGQGGRSKIDGWNDGGPYLDESDITSNSPSNCSNSVNRDISSPEACANFNPNKSPKSTKPENSLLSERSHAVSNQTNMQGKGSSSDAFHDSFSSAPSTSSHGSVPDEYEALGDVYIWGEVINDNVGKFAGEQNSNCVGLRTDVLFPRLLESNVVLDVVHIACGARHATLVTRQGDAFTWGEESGGRLGHGVRKDYIQPHLVESLAATNVYFVACGEFHSCAVTMDGELYTWGDGTHNAGLLGHGTDVSHWMPKRVAGPLEGLPVASVACGTWHTALVTSMGQLFTFGDGTFGVLGHGDRESVSCPREVESLSGLRTIAVACGVWHTAAVVEVIVTHSVIVTHSSTSVSSGKLFTWGDGDKNRLGQGDKDPRLKPTCVPALIDYNFSKISCGHSLTVGLTISGQVFTLGSPVYGQLGNPQADGKQPSLVRDELFGKAVEEVACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKAPTLVETLKDRHAKHIACGSNYTTAICLHKWVSGDEQAQCSACRQAFGFARKRHNCYNCGLVHCHSCSSKKAHSAALASNPSKPNRVCDSCYSKLIKMSDTNINNRRGAIPRLSGENKDRLEKGEIRLLKSVPSNMELIELLDNKAAKHGRKADTSSLGSRYQAPSLLQLKEAVLATSIEFQRPALKLALMNSVVSSRSVSPFYRRPSPPRSATPVPTVSGLSFSNSMTDSLTKTNELLNQEVVKLRAQVESLKQKCELEELEIRKTVKKTQEALSLAAEESTKSKAAKEVIMSLTAQLKNLAMRLPSGSYDLESMRVVHLPNGSDLNGTHHSDAIRERYSRPNSLTSISLASPRTSASASASVKGFQGQAHSFQEEPGTETTWQEEHAKFRLSNGGCGGPLSNGSVSEAVDENKERSNNADLAANSNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGENQAENWWSENRRRVYEKYNIHGLDKSPVSRQHTRRSDRPTSPASSIPTT 1255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3963709 3980307 - Bpe008449.1 Bpe02g00609 98758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00609 1255 Pfam AhpC/TSA family 65 184 IPR000866 GO:0016209|GO:0016491
Bpe02g00609 1255 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 581 591 IPR000408 -
Bpe02g00609 1255 Gene3D Glutaredoxin 48 197 - -
Bpe02g00609 1255 CDD PRX_like1 65 184 - -
Bpe02g00609 1255 MobiDBLite consensus disorder prediction 1130 1162 - -
Bpe02g00609 1255 Pfam FYVE zinc finger 768 833 IPR000306 GO:0046872
Bpe02g00609 1255 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 612 663 IPR000408 -
Bpe02g00609 1255 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 716 767 IPR000408 -
Bpe02g00609 1255 ProSiteProfiles Thioredoxin domain profile. 62 262 IPR013766 -
Bpe02g00609 1255 Coils Coil 967 1008 - -
Bpe02g00609 1255 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 594 IPR000408 -
Bpe02g00609 1255 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 529 539 IPR000408 -
Bpe02g00609 1255 Pfam Regulator of chromosome condensation (RCC1) repeat 611 658 IPR000408 -
Bpe02g00609 1255 Pfam Regulator of chromosome condensation (RCC1) repeat 436 484 IPR000408 -
Bpe02g00609 1255 Pfam Regulator of chromosome condensation (RCC1) repeat 543 591 IPR000408 -
Bpe02g00609 1255 Pfam Regulator of chromosome condensation (RCC1) repeat 487 538 IPR000408 -
Bpe02g00609 1255 Pfam Regulator of chromosome condensation (RCC1) repeat 663 712 IPR000408 -
Bpe02g00609 1255 Pfam Regulator of chromosome condensation (RCC1) repeat 717 764 IPR000408 -
Bpe02g00609 1255 MobiDBLite consensus disorder prediction 305 366 - -
Bpe02g00609 1255 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 173 1232 - -
Bpe02g00609 1255 Pfam Transcription factor BRX N-terminal domain 1018 1050 IPR027988 -
Bpe02g00609 1255 SUPERFAMILY Thioredoxin-like 63 184 IPR036249 -
Bpe02g00609 1255 SUPERFAMILY PH domain-like 178 261 - -
Bpe02g00609 1255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 836 IPR013083 -
Bpe02g00609 1255 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 488 542 IPR000408 -
Bpe02g00609 1255 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 772 834 IPR017455 -
Bpe02g00609 1255 Pfam Transcription factor regulating root and shoot growth via Pin3 1169 1224 IPR013591 -
Bpe02g00609 1255 PRINTS Chromosome condensation regulator RCC1 signature 529 545 IPR000408 -
Bpe02g00609 1255 PRINTS Chromosome condensation regulator RCC1 signature 545 559 IPR000408 -
Bpe02g00609 1255 PRINTS Chromosome condensation regulator RCC1 signature 438 454 IPR000408 -
Bpe02g00609 1255 PRINTS Chromosome condensation regulator RCC1 signature 419 432 IPR000408 -
Bpe02g00609 1255 PRINTS Chromosome condensation regulator RCC1 signature 488 504 IPR000408 -
Bpe02g00609 1255 PRINTS Chromosome condensation regulator RCC1 signature 653 671 IPR000408 -
Bpe02g00609 1255 PRINTS Chromosome condensation regulator RCC1 signature 711 732 IPR000408 -
Bpe02g00609 1255 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 173 1232 - -
Bpe02g00609 1255 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 374 435 IPR000408 -
Bpe02g00609 1255 ProSiteProfiles BRX domain profile. 1170 1225 IPR013591 -
Bpe02g00609 1255 SUPERFAMILY RCC1/BLIP-II 374 769 IPR009091 -
Bpe02g00609 1255 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 487 IPR000408 -
Bpe02g00609 1255 MobiDBLite consensus disorder prediction 938 958 - -
Bpe02g00609 1255 Gene3D - 290 498 IPR009091 -
Bpe02g00609 1255 Gene3D - 499 595 IPR009091 -
Bpe02g00609 1255 MobiDBLite consensus disorder prediction 1227 1255 - -
Bpe02g00609 1255 SMART fyve_4 766 835 IPR000306 GO:0046872
Bpe02g00609 1255 SUPERFAMILY FYVE/PHD zinc finger 768 839 IPR011011 -
Bpe02g00609 1255 Gene3D - 596 779 IPR009091 -
Bpe02g00609 1255 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 664 715 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00609 - - - tcc:18592573 1467.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00609 Bpe14g00336 CCT
Bpe02g00609 Bpe02g01605 CCT
Bpe02g00609 Bpe04g00023 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00609 Bpe-Chr2:3963709 Bpe02g01605 Bpe-Chr2:18929340 0 dispersed
Bpe02g00609 Bpe-Chr2:3963709 Bpe04g00023 Bpe-Chr4:222995 1.05E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00609 Bpe_Chr02 FPKM 73.404831 78.607651 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0