Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00618 TTGAAGATGACTCAGGGAAGAGGCAGTGCAGGCCAGATCGTCGGGTTTGGTTCAGTTATTGCCCTAGTGTGGCTGCTTGCTCAGCTGCAAAATGCCGATGGAGCCGTCTACACCGTGGGAGGCCCTTCTGGGTGGACTTTCAACGTGGAGTCCTGGCCTCAGGGAAAGCGTTTCAGAGCCGGCGACTTTCTCAAATTCAACTATGATTCTTCGATTCACAACGTGGCTGTTGTGAACAAAGCTGGGTACGGAAACTGCAGAACTCCAGGCGGATCGAAGGTGTATAAAACTGGGAATGATCAACTGAAACTTGTGAAAGGCCTCAACTACTTCATCTGCAGCTTTCCTGGGCACTGCGCATCTGGGATGAAGATCGCTGTTAATGCCCTTTAA 393 50.89 LKMTQGRGSAGQIVGFGSVIALVWLLAQLQNADGAVYTVGGPSGWTFNVESWPQGKRFRAGDFLKFNYDSSIHNVAVVNKAGYGNCRTPGGSKVYKTGNDQLKLVKGLNYFICSFPGHCASGMKIAVNAL 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4027419 4027922 + Bpe008458.1 Bpe02g00618 98767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00618 130 ProSitePatterns Type-1 copper (blue) proteins signature. 107 123 IPR028871 -
Bpe02g00618 130 Pfam Plastocyanin-like domain 45 123 IPR003245 GO:0009055
Bpe02g00618 130 PANTHER BLUE COPPER PROTEIN 17 128 IPR039391 GO:0009055
Bpe02g00618 130 ProSiteProfiles Phytocyanin domain profile. 35 130 IPR003245 GO:0009055
Bpe02g00618 130 SUPERFAMILY Cupredoxins 35 129 IPR008972 -
Bpe02g00618 130 CDD Plantacyanin 35 129 IPR041844 -
Bpe02g00618 130 Gene3D - 35 129 IPR008972 -
Bpe02g00618 130 PANTHER BLUE PROTEIN, PUTATIVE-RELATED 17 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00618 - - - cmo:103485741 189.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00618 Bpe-Chr2:4027419 Bpe05g00399 Bpe-Chr5:18378223 5.02E-41 dispersed
Bpe02g00618 Bpe-Chr2:4027419 Bpe14g00466 Bpe-Chr14:4192829 9.56E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1192 Blo01g01321 . Bda01g00688 . Bpe02g00618 . . Bma01g02106 . Cmo15g00642 . . . . Sed01g0954 . . Bhi04g01831 Tan11g1205 Cmetu03g0089 . Hepe02g2751 . Lcy10g1303 . . . . . . . . . . Cone20ag0408 . . . Cme03g00426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00269 . Chy03g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000300 8 5 4 2 2 5 6 3 5 4 3 5 8 4 4 7 5 4 3 4 4 5 2 4 6 5 4 8 6 4 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00618 Bpe_Chr02 FPKM 3.46077 3.626949 3.574047 3.567116 7.749997 7.628922 7.47617 5.749519 5.100926 5.359958