Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00619 ATGGTAGGACTTGGAATCAAGCACCGATCCAAATTTATACCTCACTGCTCGCCCTCCAGACCCATCTTCCTCCTCCACTTTCTCCATAAACGACGACACACAGACTCTCTCTCTCTCTCTGAGAAGGAAGACATGGACGTGGAGCAAGAAGAGATGCAATTTCTGGGCTTCTTTGGGATCTTGAGGGAGTCTTTCAAGATCATCAATACGTGGAGAAAGATCTTCGGCGAGATCGCTCTCTCGTTGATCCTCCCTTTGACTTTCGTTTTCTTATGTCAGATCGAAATTACCCACTTCTTGGTCAGAAAAATCATGTACAACGAGATCGTTTTGGATCATACCCAAACCGGAACTGCTTCCTACAACAAAATCTCCGATCTAGTCACCTCCGAATGGACCTACCTCCTGCTCTTCAAACTCGTCTACTTGATCTTCCTTGTAATCCTCTCCCTCCTCTCCACCTCCGCCGTCGTTTACACTATCGCCTGCATCTACACCGGCCGGGAAGTCACCTTCAAGAAGGTCATGACCGTCGTCCCCAAGGTTTGGAAGAGACTGATGATCACCTTCCTATGCCTCATGCTCTTCTACTTTCTCTTCAATCTCGTCTCATTTTTGGTCATCGCTATCGTTATGGCCCTGATGGTGCTTTCAAATAACACCAGTATGGGACCCGCAATAACAGTCGCCGTTTTGCTTTCCTGTATTTATTTTGTGGGTTTCGTCTACATGAACATAATTTGGCAACTGGGCTACGTTATTTCGGTTCTAGAAGACATCCGGGGAGCTAAAGCTTTGCAGAAGAGCAGAAACCTTCTGAAGGGAAAAATGGTGGTGGCTACCATCATCTTCATAACGAAATACTTCTTGTCTGCGATGATTCAGTTTGCGTTTCAGAAGCTTTTCGTCCATGGCGGAAGGTTGGGGATGGTCAGCCGGTTGGCTTATGGGTCGATCTGCTTCTTGCTACTTTTCAAGGTCTTTCTTCTAGGGCTTGTGATTCACACTGTCCTCTACTTCGTCTGCAAGTCATACCACCATGAGAACATCGACAAGTCCGCTCTGTCGGATCATCTTGAAGTCTATATAGGAGACTACCTTCCGTTGAAATCCAAGGATGTTCAGCTCGAACGATTCCAAGTTTGA 1146 46.51 MVGLGIKHRSKFIPHCSPSRPIFLLHFLHKRRHTDSLSLSEKEDMDVEQEEMQFLGFFGILRESFKIINTWRKIFGEIALSLILPLTFVFLCQIEITHFLVRKIMYNEIVLDHTQTGTASYNKISDLVTSEWTYLLLFKLVYLIFLVILSLLSTSAVVYTIACIYTGREVTFKKVMTVVPKVWKRLMITFLCLMLFYFLFNLVSFLVIAIVMALMVLSNNTSMGPAITVAVLLSCIYFVGFVYMNIIWQLGYVISVLEDIRGAKALQKSRNLLKGKMVVATIIFITKYFLSAMIQFAFQKLFVHGGRLGMVSRLAYGSICFLLLFKVFLLGLVIHTVLYFVCKSYHHENIDKSALSDHLEVYIGDYLPLKSKDVQLERFQV 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4028860 4030005 + Bpe008459.1 Bpe02g00619 98768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00619 381 PANTHER OS08G0107100 PROTEIN-RELATED 45 379 - -
Bpe02g00619 381 PANTHER PROTEIN, PUTATIVE-RELATED 45 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00619 - - - jre:108980520 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00619 Bpe-Chr2:4028860 Bpe11g00425 Bpe-Chr11:3254938 1.11E-101 dispersed
Bpe13g01195 Bpe-Chr13:17314057 Bpe02g00619 Bpe-Chr2:4028860 3.20E-07 dispersed
Bpe13g01396 Bpe-Chr13:19175258 Bpe02g00619 Bpe-Chr2:4028860 1.36E-09 dispersed
Bpe02g00619 Bpe-Chr2:4028860 Bpe08g00968 Bpe-Chr8:12095541 1.21E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1191 Blo01g01319 . Bda01g00687 . Bpe02g00619 . . Bma01g02105 . . . Cma09g01066 . . . Cpe06g00869 . Bhi04g02153 . . . . . . . . . . . . . . . Cone6ag1275 . . . . . . . . . . . . . . . Cmo09g01074 . . . Car09g00968 . Cpe02g00867 . . . . . . . . . . . . . . Lsi08g00271 . Chy03g00838 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004048 2 1 2 7 3 0 1 1 0 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00619 Bpe_Chr02 FPKM 3.552219 5.312508 6.577919 5.496548 10.218426 8.108948 10.747615 6.528807 6.103458 7.586112