Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00620 ATGGAGTTTGACCTGCCTTTTTTGGCTCGACAGTTACAGTTCTGTAATACCCAAATTTCGATTCATCGAGGGAGACAGATTCATGTCGTCTTTCTCAAAATGGGTCTTCTTTGCTCTCCCCTTTCTTTGGGTAATCGTCTTCTCCAAATGTATACCAGGTGTGACAGTATGGTTAATGCACATAGGCTGTTCGAGGAAATGCCGCTGAGAAACTGTTTCTCTTGGAATACCATGATTGAAGGCTATCTTAAATTGGGGAACGAAAAGAAGTCTCTCGAGCTGTTTCAATCTATGCCCAGTAAAAATGACTTTTCATGGAATGTGATTGTTTCTGGACTTTTGAAATTTGGACGGCTTGAGACTGCACGGAGCTTGTTCGATGATATGCCTAGGAAGAATATGGTGGTTTGGAATTCAATGATTCATGGCTATGCCCGATATGGATGTCCGAGCGAAGCTCTGAGGCTTTTCAAGGAGTTGAATTCAGAACCTTTAGAAATATCAATCATGGATAATTTTGTCTTGGCAACTGTATTCAGGGCTTGTACAGATCTTCTGGCTCTTGAACAGGGGAAGCAAATTCATGCACGTTTTTTGGTTGACAAAGTCGAATTCGACTCAGTTTTGGCTAGCTCGTTGATCAATTTTTATGGCAAGTGTGGAGACTTGGATAGTGCAAATCATGTTTTGAATATGATTAAAGAACCAGATGACTTCTCTCTATCAGCACTGGTTTCTGGGTATGTGAACTGCAGTAGATTTTACGACGCCAAAAGGATATTTGACAGAAAACACGATCCGGGTGTTATAGTGTGGAACACAATGATTTCAGGGTATGTTTCCAATGGCGAAGAAATGGAAGCTTTATCTCTTTTTAACAATATGAGAAGTAAAGGAGTTGAGCAAGATTCATCGACACTTACAAGTATAATAAGTGCTGGAATCAGCTTAGGCTCTATTTCACACATTAAACAGATGCACATTCTCGCTCTTAAGGTTGGGCTCGTCGATGATGTTGTGGTTGCAAGTTCTCTGATCGATGGGTATTCCAAATGTGGAAGACCAGATGGGGCTTGTAAATTATTTAAGGAGCTCAAATATTTTGATACAATCTTGCTAAATTCTATGATCACAATGTATTCCAACAGTGGAAGACTTAAAGAGGCTAAAATGATATTCAAGACGATGACAAACAAAAGCTTGGTGTCGTGGAATTCAATGACAGTGGCTTTAAGTCAAAATGGTTGTCCGATGGAAGCCATAGATCTTCTCTGCGAAATGAACAAGCTCGGGTTGGAAATGGAAAAATTTAGCATGGCCAGTGTGATCAGCTCCTGTGGTTGCATCTCGTTACTCGAACTCGGCGAACAGATTTTCGCTAAGGCTATTGTTTCTGGACTGGAATCCGATAGAATCATTTCTACCTCTCTCGTTGATTTCTATAGTAAATGCGGTCTCTTTGAACAAGGGCGGAAAGTTTTTGATGGAATGGTAAAAGTTGATGAAATATCTTGGAACTCGATGATAATTGGCTATGCAACAAATGGTCGTGGAATGGAAGCACTGAATCTTTTTAATGAGATGAGGAAAGCTAATGTGATACCCTCTGGAATTACATTTACTGGCGTTCTCTCTGCTTGCAATCATTGTGGTCTCGTCGAAGAAGGACGGAAATGGTTTGAAACGATGAAAAGGGACTATACTATCAATCCGAGTATCGAACACTACTCTTGTATGGTCGACCTTTTTGCTCGAGCTGGGTGTCTCCAAGAAGCTGTAAATGTGATTGAAAATATGTCCTTTGAGGCAGATGTAAGTATGTGGTCGGCTGTGCTGAGAGGATGTGTTGAACATGGAAATAGAACTGTTGGGAAGATAGCTGCAGAGAAAATTATTGAATTTGAGCCTCGTAACTCTGGTGCTCATGTTCAACTGGCTAGCATCTTGGCCGCCATTGGAGACTGGGAAGGATCGGCTAAGATTCGGAAAGCTATGAGAGAGAAAAAGATTCAAAAGAATCCTGGTTACAGTTGGGCTGATACTGGAACCATTATTGCAGAATCTGTCCCTGCGTTCGCTGTGAATTCTGTTTAA 2094 41.07 MEFDLPFLARQLQFCNTQISIHRGRQIHVVFLKMGLLCSPLSLGNRLLQMYTRCDSMVNAHRLFEEMPLRNCFSWNTMIEGYLKLGNEKKSLELFQSMPSKNDFSWNVIVSGLLKFGRLETARSLFDDMPRKNMVVWNSMIHGYARYGCPSEALRLFKELNSEPLEISIMDNFVLATVFRACTDLLALEQGKQIHARFLVDKVEFDSVLASSLINFYGKCGDLDSANHVLNMIKEPDDFSLSALVSGYVNCSRFYDAKRIFDRKHDPGVIVWNTMISGYVSNGEEMEALSLFNNMRSKGVEQDSSTLTSIISAGISLGSISHIKQMHILALKVGLVDDVVVASSLIDGYSKCGRPDGACKLFKELKYFDTILLNSMITMYSNSGRLKEAKMIFKTMTNKSLVSWNSMTVALSQNGCPMEAIDLLCEMNKLGLEMEKFSMASVISSCGCISLLELGEQIFAKAIVSGLESDRIISTSLVDFYSKCGLFEQGRKVFDGMVKVDEISWNSMIIGYATNGRGMEALNLFNEMRKANVIPSGITFTGVLSACNHCGLVEEGRKWFETMKRDYTINPSIEHYSCMVDLFARAGCLQEAVNVIENMSFEADVSMWSAVLRGCVEHGNRTVGKIAAEKIIEFEPRNSGAHVQLASILAAIGDWEGSAKIRKAMREKKIQKNPGYSWADTGTIIAESVPAFAVNSV 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4039041 4041134 - Bpe008461.2 Bpe02g00620 98769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00620 697 Gene3D Tetratricopeptide repeat domain 30 101 IPR011990 GO:0005515
Bpe02g00620 697 Gene3D Tetratricopeptide repeat domain 547 678 IPR011990 GO:0005515
Bpe02g00620 697 Gene3D Tetratricopeptide repeat domain 451 546 IPR011990 GO:0005515
Bpe02g00620 697 Gene3D Tetratricopeptide repeat domain 323 450 IPR011990 GO:0005515
Bpe02g00620 697 Gene3D Tetratricopeptide repeat domain 170 322 IPR011990 GO:0005515
Bpe02g00620 697 Pfam PPR repeat 104 133 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat 73 102 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat 575 599 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat 374 399 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat 475 499 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat 402 432 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat 45 72 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat 135 160 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat 211 235 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat 343 366 IPR002885 -
Bpe02g00620 697 Gene3D Tetratricopeptide repeat domain 102 163 IPR011990 GO:0005515
Bpe02g00620 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Bpe02g00620 697 TIGRFAM PPR: pentatricopeptide repeat domain 73 101 IPR002885 -
Bpe02g00620 697 TIGRFAM PPR: pentatricopeptide repeat domain 135 160 IPR002885 -
Bpe02g00620 697 TIGRFAM PPR: pentatricopeptide repeat domain 343 365 IPR002885 -
Bpe02g00620 697 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Bpe02g00620 697 TIGRFAM PPR: pentatricopeptide repeat domain 503 536 IPR002885 -
Bpe02g00620 697 TIGRFAM PPR: pentatricopeptide repeat domain 104 135 IPR002885 -
Bpe02g00620 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Bpe02g00620 697 PANTHER - 7 680 - -
Bpe02g00620 697 PANTHER OS01G0913400 PROTEIN-RELATED 7 680 - -
Bpe02g00620 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 101 IPR002885 -
Bpe02g00620 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Bpe02g00620 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Bpe02g00620 697 Pfam E motif 618 678 IPR046848 -
Bpe02g00620 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 132 IPR002885 -
Bpe02g00620 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 368 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat family 501 547 IPR002885 -
Bpe02g00620 697 Pfam PPR repeat family 267 313 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00620 - - - jre:108981365 926.006
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00620 Bpe-Chr2:4039041 Bpe11g01671 Bpe-Chr11:12913569 2.57E-19 dispersed
Bpe02g00620 Bpe-Chr2:4039041 Bpe05g00127 Bpe-Chr5:2842824 4.55E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016657 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00620 Bpe_Chr02 FPKM 33.454166 24.913769 32.398575 31.878191 55.406334 65.354874 46.653755 41.59771 39.387016 40.368317