Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00621 TCTTTTCTTCCAAACTCTAGACCAGACTCCTTGGAATTCTTCCCTCTCTCTTTCCACCCCATGTTTGGTAAGCGCTATGATAGTTGGGACGCCATTAATTTGGCCTCGCGAAATACGTTTCTTGCTGAAGAACGCGACGATTTCCGAACTTGGGATGCCGCCGAGTCTCTTCTCCGCGGCGAAGCCAAGGCGGGACAAGACTTTTGTTCCGGAGTTTCTTCTCCGCTGCTTGGGAGGACGAGTCCGACAAGGGTCCCCCAACACCACCGGAATAGTTATCGCAATCTTTCTCCCGAGTCTAGAACGCAAGCGATCGTCAGAGGGCAGAGGGAGCTCATGGAGATGGTGAGGAACATGCCCGAGTCCTGTTACGAGCTTTCGTTGAAAGACCTGGTGGAGCACCCGATGGTTCTGGCGCGACAGGAAGAAACCACAGCCGACGAAAGGGATAGTTTAAGCTCTGAATTGTTGTACAGAAGAGAACTCAGCAAGAAGAAGAACCAAAACAATGCGTTAATTCGTAGAGACAGGACAATTGACAATGGGGGTTTATACTTAAAAATGATGTTTCCATTATCTCTGGGATCAACCAGAAAGAAGACGAAGAAGAACGAATCGGGGTTGAATAACGAAGAAAAAATCGCGGGGAGGCCTTCAGTTTCCGATGGCTCTGCAAAAGGAGTGGACAAAGAGTGGTGGAAGAGGAGGAGTTCGGTTTCCTGCGACAGCGAGAGCGGTGGTTCTAGCTTAAACAGTGGGAGCGTGAGGAGCAGTGGGAGCAGCAGCACTGGCAGTAGCGGCAGTAGCAGAAGCATCCACAGGCCACCAAACAAGATGAAGACACCGTCTTTATGGCTTATTTTTTTTTTTTGTGATGAAACGTCCCTTTCCAATATCTTCATTTGCTCAAACAGATCACAAATGGGATATTTTTTTTTATCTAAAAACTGGGGCATCAAAACCCAGAAAGAGAAGTTCTTTGAACAACTCCAGATTGCTCTGGCTTTAATTTGGTCTCACAAAGACATGACTAGTAACGCAGCAGCATGTGCTGAGAGGGCAACCAACGACATGTTAATTGGTCCGGATTGGGCTATTAACATTGAGCTATGTGATATTATTAACATGGAACCTGGGCAAGCAAAGGATGCCTTGAAGATACTTAAAAAGCGCCTGGCCATTAAAAACCCTAAAATACAGCTTCTTGCTCTTTTCGCATTGGAGACTATCAGCAAAAATTGTGGTGAAAATGTATTTCAATTGATCATCGAGCGCGATATTCTTCATGAAATGGTTAAAATAGTAAAGAAGAAGCCCGACTTTCATGTAAAGGAAAAGATATTGAGTTTGATTGATGCATGGCAAGAAGCTTTTGGGGGACCAAGGGGCAGATATCCTCAGTATTATGCGGCCTACAATGAAATAAAGGTAATTGTCATTTTGTCAATCTGCCATGGCCAGATTTCTACATCCGAAGACAATTGTATTCCCGTGTCAAGCTTTCCGCTGACAAACCCTGTATACCGAAGCGACTTCTTCCTTTGGAAGAATTATCTTCTAAGGTTCTTTACATTAAACCCAAGTGCGGGAGTTGAATTTCCACCCCGAGAAGACAATGGAGTGCCGTTTTTCACTCCACCCCAAACCCAACCTATAGTTCACCATCCTGACTCGACCTATGATGACGCCGCACTTCAGGCATCTCTTCAGTCTGATGCGTCTGGCCTTAGCTTGCCAGAAATTCAGACAGCGCAGGGACTGGCAGATGTGTTGATGGAAATGCTTGGTGCTTTGGATCCTAAGAAGCCAGAGAGTGTGAAGGAAGAAGTGATAGTTGACCTCGTAGAGCAGTGCCGGTCGTACCAAACACGTGTGATGCTACTCGTGAACGAGACTGCAGATGAGGAACTTCTTTGTCAGGGATTGGCCTTGAACGACAGTTTGCAGCGAGTTCTTGGTCGACACAATGACATTTTGAATAGAACCTCCAGTACAGGGGTAAGAGAAACTGAATCCTCAGTCTCACCGATGTTGAATTTGAACCACGAAGATGAGGATTCGGAAGATGAGTTTGCCCAGCTAGCTCATAGGCCATCTAGAGAGAGTTTGCAAGACAAGAGCAGGAGATCAGCCAATGGCAGCTCTGATCAAGTTCGAATCAACCCATTACTTCCTCCTCCCCCCGCTTCAAAGACTCCTGTTTCTTCTCGCGACACTCCCATGGTAGACTATTTAAGTGGAGACCATTATAAGTCGAAAGAATCTCCTGAAACCTCAAGACCCATATCTGTCCCTCCTCTCCGCACCGACTCGACTTCAACTGAACCAATGAATTCAACTCTATCTTTTTCTCCGCCTCCTTATTCTCGTCCAAAAACCCCCCTCATATCTCCCTTCACTGGCCTTCCTGTCTTTGATGAGCCTCCACCGAGAGACAGATCCCCAGACCCACTTCCTCCGGCTCCGTGGGACGGTCAGTTGGGTCATGACACCCCTGCTTCAATCCCTCCTCCACCGTCGAGATATAATCAGAGACAGCAGTTTTTCGAGCAAAAACAAGGTCATGGGGGAAGCTCAACTCATCCAAGCAGTGAATTTGGTTCTTCGTATGACAGCTTAGTCGGACCAACTCAAAGCCTCTCTCTCAATTCTACACCGACCAAACAAGAAAAACCAGAAGATGCCCTCTTCAAAGATCTCGTCGATTTTGCAAAAGCCAAGTCGTCTTCGCCCTCGAAAACCAACAGATCTTACTAG 2757 46.72 SFLPNSRPDSLEFFPLSFHPMFGKRYDSWDAINLASRNTFLAEERDDFRTWDAAESLLRGEAKAGQDFCSGVSSPLLGRTSPTRVPQHHRNSYRNLSPESRTQAIVRGQRELMEMVRNMPESCYELSLKDLVEHPMVLARQEETTADERDSLSSELLYRRELSKKKNQNNALIRRDRTIDNGGLYLKMMFPLSLGSTRKKTKKNESGLNNEEKIAGRPSVSDGSAKGVDKEWWKRRSSVSCDSESGGSSLNSGSVRSSGSSSTGSSGSSRSIHRPPNKMKTPSLWLIFFFCDETSLSNIFICSNRSQMGYFFLSKNWGIKTQKEKFFEQLQIALALIWSHKDMTSNAAACAERATNDMLIGPDWAINIELCDIINMEPGQAKDALKILKKRLAIKNPKIQLLALFALETISKNCGENVFQLIIERDILHEMVKIVKKKPDFHVKEKILSLIDAWQEAFGGPRGRYPQYYAAYNEIKVIVILSICHGQISTSEDNCIPVSSFPLTNPVYRSDFFLWKNYLLRFFTLNPSAGVEFPPREDNGVPFFTPPQTQPIVHHPDSTYDDAALQASLQSDASGLSLPEIQTAQGLADVLMEMLGALDPKKPESVKEEVIVDLVEQCRSYQTRVMLLVNETADEELLCQGLALNDSLQRVLGRHNDILNRTSSTGVRETESSVSPMLNLNHEDEDSEDEFAQLAHRPSRESLQDKSRRSANGSSDQVRINPLLPPPPASKTPVSSRDTPMVDYLSGDHYKSKESPETSRPISVPPLRTDSTSTEPMNSTLSFSPPPYSRPKTPLISPFTGLPVFDEPPPRDRSPDPLPPAPWDGQLGHDTPASIPPPPSRYNQRQQFFEQKQGHGGSSTHPSSEFGSSYDSLVGPTQSLSLNSTPTKQEKPEDALFKDLVDFAKAKSSSPSKTNRSY 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4043353 4052428 + Bpe008462.1 Bpe02g00621 98770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00621 918 MobiDBLite consensus disorder prediction 239 276 - -
Bpe02g00621 918 MobiDBLite consensus disorder prediction 757 786 - -
Bpe02g00621 918 SMART VHS_2 347 479 IPR002014 GO:0035091|GO:0043130
Bpe02g00621 918 CDD VHS 352 476 - -
Bpe02g00621 918 MobiDBLite consensus disorder prediction 662 680 - -
Bpe02g00621 918 PANTHER TOM1-LIKE PROTEIN 4 528 917 - -
Bpe02g00621 918 Pfam GAT domain 587 659 IPR004152 GO:0035091|GO:0043130
Bpe02g00621 918 ProSiteProfiles VHS domain profile. 354 476 IPR002014 GO:0035091|GO:0043130
Bpe02g00621 918 ProSiteProfiles GAT domain profile. 572 660 IPR004152 GO:0035091|GO:0043130
Bpe02g00621 918 MobiDBLite consensus disorder prediction 197 276 - -
Bpe02g00621 918 Pfam VHS domain 351 460 IPR002014 GO:0035091|GO:0043130
Bpe02g00621 918 Gene3D - 347 477 IPR008942 -
Bpe02g00621 918 Gene3D - 569 667 IPR038425 -
Bpe02g00621 918 SUPERFAMILY GAT-like domain 538 659 - -
Bpe02g00621 918 MobiDBLite consensus disorder prediction 662 895 - -
Bpe02g00621 918 MobiDBLite consensus disorder prediction 73 96 - -
Bpe02g00621 918 PANTHER TOM1-LIKE PROTEIN 528 917 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bpe02g00621 918 PANTHER TOM1-LIKE PROTEIN 343 507 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bpe02g00621 918 MobiDBLite consensus disorder prediction 840 890 - -
Bpe02g00621 918 SUPERFAMILY ENTH/VHS domain 350 476 IPR008942 -
Bpe02g00621 918 MobiDBLite consensus disorder prediction 689 707 - -
Bpe02g00621 918 CDD GAT_GGA_like_plant 580 658 - -
Bpe02g00621 918 PANTHER TOM1-LIKE PROTEIN 4 343 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00621 - - - vvi:100260765 632.484
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00621 Bpe05g00141 CCT
Bpe02g00621 Bpe02g01728 CCT
Bpe02g00621 Bpe04g00015 BCT
Bpe02g00621 Bpe04g00249 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00621 Bpe-Chr2:4043353 Bpe04g00391 Bpe-Chr4:2455695 2.29E-95 dispersed
Bpe02g00621 Bpe-Chr2:4043353 Bpe04g00015 Bpe-Chr4:164936 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
Vvi18g1123 Blo01g01602 . Bda01g00479 Bda03g00293 Bpe02g00621 Bpe04g00249 . Bma01g02372 Cmo05g00313 Cmo12g00356 . . . Car12g00382 Sed11g1091 . Cpe07g00361 Bhi04g00143 Tan02g2080 Cmetu03g0952 . Hepe10g0159 . Lcy13g1908 Cla08g01418 Cam08g1897 Cec08g1474 Cco08g1607 Clacu08g1589 . Cre08g1373 Cone4ag1976 Cone7ag1894 Cone17ag1409 Cone20ag0074 . . . Cme03g01874 . Blo18g00778 . . Bpe02g01728 Bpe05g00141 Bma01g00884 Bma05g00166 . . . Cma12g00405 Cma05g00311 Car05g00258 . Cpe11g00259 . . . . . . . . . . . . . . . Lsi08g01313 Csa02g02139 Chy03g01380 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00621 Bpe_Chr02 FPKM 6.860976 6.360096 3.271965 2.346365 6.935401 8.790913 6.551347 0.883658 0.787206 0.599737