Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00624 ATGATGTCAAATGGATTCTATAAGGAAGCTAATGTGAAAACTGGCATTGCACCTAAACAATCGTTTGAAATATCCAATAAGTGTACTTTCACCGCTAAGTGCCGGCGTGCCTTACTGAGTGTAGTAATTTCTCAGAAGTTTACATCTCTATGTAAGCTACTGTTTGAAAATTTCCAAGGAACCAAAGACCCATTGGATTTTGGCACTATAAACTCGAGAATGAAAAATGGTGCTTATGAAAGTTCACCAATTCTCTTCTCCTCAGACATACAACAGGCAATATGGAGAAAGCTTGAAAGTGTTGGAACAGAATTGGTTTCACTTGCAGTCAGCCTTTCAGATCTGTCCAAAAGTGCCTACCATGAACAGGTGAGGACTTCCAGCATATCATTCGATAAATTTCTCTTTGCAATACAGGTAAGTGTCTTGGAATGTCATTCTCATCCTAAAGCCGAACAGACAGAGGACTGTAATTTTTATCAATTGTCCTCTTGCCGACAATGTGGAGAGATGGCAGATGGGACAGATTCTTTAGTATGTGATTCATGTGAGGAAATGTACCACGTATCCTGCATCAAGCCAGCCGTGAGTGAGATTCCCCCAAAAAGTTGGTACTGTGCTAGATGCACTGCCTGTGGAATCAGATCACCACACGATAATTGTGCAGTGTGTGCAAGGCTGAATGTGCCTAAAACTATAACTAACGTTGTAGATGAAACGATGCCGCCAAATGGACTTCTGGACCATCCCATGGAAGAGAATTCAAACAGCAGTACAGATAATGAACTGTCCATGGATAGTAAAACTTCCCTCTGTAAGATTTGTGGAAATAAAGTGGAAAATGGTGACGAATTAAGAACTTGTAGTCATCCATTCTGTGCCGATAAATGTTATCATACAAGGTGCCTTACAAAAAAACAGTTAAGATCCTATGGTTCCTGTTGGTACTGCCCTTCATGTCTTTGTCGAGTGTGCTTTGTTGATCAAGATGATGACAAGATTGTCCTATGTGATGGCTGTGATCATGCATACCACATATACTGCTTGAAACCACCACGCACCTCAATTCCTAGAGGGAAATGGTTTTGTAGAGAATGCGATGCAGGTATCCGGGCAATACGTCTGGCAAAAAAGGCATATGAGAGTGCTGAAAGCGATAAGAAAAAGGGAAATAATGTGCATATTTCTTATGTTAATCTTAAAGGGAAGCTGAAGGGTGGTGACTCGGATAAAGGTGGAGGAATGGACATGCTTCTAACGGCAGCAAAGACCCTTAACTACGAAGAAAATTTAGCAGCAATTCATATGAAGAGCTGA 1317 41.0 MMSNGFYKEANVKTGIAPKQSFEISNKCTFTAKCRRALLSVVISQKFTSLCKLLFENFQGTKDPLDFGTINSRMKNGAYESSPILFSSDIQQAIWRKLESVGTELVSLAVSLSDLSKSAYHEQVRTSSISFDKFLFAIQVSVLECHSHPKAEQTEDCNFYQLSSCRQCGEMADGTDSLVCDSCEEMYHVSCIKPAVSEIPPKSWYCARCTACGIRSPHDNCAVCARLNVPKTITNVVDETMPPNGLLDHPMEENSNSSTDNELSMDSKTSLCKICGNKVENGDELRTCSHPFCADKCYHTRCLTKKQLRSYGSCWYCPSCLCRVCFVDQDDDKIVLCDGCDHAYHIYCLKPPRTSIPRGKWFCRECDAGIRAIRLAKKAYESAESDKKKGNNVHISYVNLKGKLKGGDSDKGGGMDMLLTAAKTLNYEENLAAIHMKS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4059475 4061542 - Bpe008465.1 Bpe02g00624 98773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00624 438 ProSiteProfiles Zinc finger PHD-type profile. 319 369 IPR019787 -
Bpe02g00624 438 ProSiteProfiles Zinc finger PHD-type profile. 162 212 IPR019787 -
Bpe02g00624 438 SUPERFAMILY FYVE/PHD zinc finger 161 213 IPR011011 -
Bpe02g00624 438 ProSitePatterns Zinc finger PHD-type signature. 165 209 IPR019786 -
Bpe02g00624 438 Gene3D - 108 212 - -
Bpe02g00624 438 ProSiteProfiles Zinc finger PHD-type profile. 269 323 IPR019787 -
Bpe02g00624 438 SUPERFAMILY FYVE/PHD zinc finger 261 321 IPR011011 -
Bpe02g00624 438 PANTHER D4, ISOFORM A 20 429 - -
Bpe02g00624 438 SUPERFAMILY FYVE/PHD zinc finger 321 370 IPR011011 -
Bpe02g00624 438 SMART PHD_3 324 367 IPR001965 -
Bpe02g00624 438 SMART PHD_3 271 321 IPR001965 -
Bpe02g00624 438 SMART PHD_3 164 210 IPR001965 -
Bpe02g00624 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 372 IPR013083 -
Bpe02g00624 438 Pfam PHD-finger 322 367 IPR019787 -
Bpe02g00624 438 Pfam PHD-finger 165 212 IPR019787 -
Bpe02g00624 438 PANTHER HISTONE ACETYLTRANSFERASE 20 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00624 - - - jre:109019080 494.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00624 Bpe-Chr2:4059475 Bpe02g01487 Bpe-Chr2:18157496 5.80E-13 dispersed
Bpe02g00624 Bpe-Chr2:4059475 Bpe10g00542 Bpe-Chr10:12472958 4.66E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g202 Blo01g01312 . Bda01g00681 . Bpe02g00624 . . Bma01g02095 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1438 . . Cone20ag0418 . . . . . . . . . . . . . . . . . . . . Cpe02g00868 Bhi09g01871 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007161 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20902 PF00628 PHD 7.40E-13 CL0390 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00624 Bpe_Chr02 FPKM 1.321799 1.338954 5.405746 5.458219 0.0 0.0 0.0 38.656227 38.874058 37.565556