Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00629 ATGGGTTCATACGACTTTACCACTGTGGTCGGTGAGCCGATGTGTGGCCCTACCATTGTGGATTTTTCAGAGAAACTTGTTTCTGAACATCAGCCATGCCCCAACTCGGGTTCAGTTTATTGTTTGTTGGAAGCTAATTCAAATGAGGTAGATAACTGCCCCAATTTAAGTAGGGATGATATCCTCCTTAGTAATGCAATAGAGCCGACTGGTGATTGGTTGGTGACTCAATGTAAGAATCCTGACGAGTCAATTCTCTCAAATGAACTGTATTCTAAGTGTGGAATTAGTGGCGTCTCTTTGGATGAGAATTGGGTTGAAACTGATTCTTGCAATATGAAGAGTGGAAAGTTGATGCAATGTGATGAGTATGGATTGTTGAACACTACTGATGGCTTTAAATTGACCTCAGAAATCATTGCGAGAGATACCTCATCTGGATTTTTTATTCAACAAAATGAAGAGAATGCCAATAATGGTGTTGGTGGTTCTCCCGAAACAATAGTAAAAGAGGTTACGGAAGAAAAAAAACTTGATTTAATTGAGATAGAGGCTGATACTGGTGGATTTTTATCACCTTCACGTGGCAGTGAGATTTCCTTGAACTCAATGGTTCCTTTAATAAATTATTGCTTTCAGAAAAATGAGTTGAAGGACACCAATGGCATTACTGGTTTTGTGGTTCCGGATAAACTAGAACCCTTCAATAAATTTGCATCTACTCTAAGAGATCACATAGAACTACTGTTGCCAAAAGCTTGTGACTCACTCATGCATAGTGTTATGGATTCTGGTAATATGGACGACAAGCATGTTATTGGGTTCTCCACAGAGAAGAACATCGAGGGTGCTGGACTAGAAAATGGATTTGACAACTCCTGCGTCACTATAATTCCATCAATGGGTTGCCAGAAGACTGATGAAATATTGCAACATGATGGTTCCTTAACTACGATTACCCAAGAAAGTGAGTGTCTGGAGGAAAAGAGTTGCATTGGTTCTTTGGGGCAAAGCAGTTTAGAAGTTGCGAAAAATTGTAATCACATTACTATGAACTCAAAAGTTGATGTTGCCAAAAATGCAATGCCACTAGAAAGAAACAGCAATTTGAAGGAAGGTTTCATAACAGGAAATTCAATTGCGGAGAAGTCAACATCTCAAGAACTATGTCATCCTTTTGATTTTAGAGATGATGGATCTTCCGAAATGATGAATACACAAAATATTATGAATACACAAAATATTTCTGTTGGAGATGCTACTTTCCTTAGCTCTAAAAGAGGCTGTGACAGTTCTGGGCAGATTGATTATGGGAGCAGAGACAATTTCAGAGTTGATTGTGTTCCTGAAGTCAATTGTGCTGAGGCTGTGGCATCTACTTCTGGACTTAATAATGTTCAGAGAAGTAAATCAGTGCGTAAGAGTCGTACAAAAAAATCTACTAAGAGGAGCAAGGGCGAAAGAAAAGTGCCACACTCATGTAGGAATGTTCAAATTATATTTGAAGCTGCTAGAAGAAAGAGAACTTGTCTCTCCAAACCGTCCCGCTCGACTATATGGGGATCACTGAGCTGTACTCAATCTTCCTGGGAAAGTAGTGAGGTTCAGATTCAACAATTTCAGGATCAAGAATTAATGAAAGGGAGGAAGGGTAGACATAATGCCAAGCGGAATAAGAATGAAAGAAAACGAAGATCAAAAGGGTCAAAGCGGGAAAAGTGCTCTACTTCAACTGGTTGTCTCCGTTTGAAGGTTAAGTTGGGGAAACAGATGGATCAAAGTTTTTTGAATATAATGATTCCTGATGTAGATACATCACTGTCGGCTACTGCTACTAATAGTAGTTGTGGGACAGAGCCATATTGGAAAACGAGTTTTGATTTCCCTAAATTAACTAAGCATGATGAATGTAAAGTTGTTGAAGGGGCACCTAGTAAGCATGTGAATTCCAAAGAAAACCCTGATAATCTTCATTGTACTCTTTCAAGCATTCAACTAGAAAATAATGTTTCTATTGATCCTATTATCACGCCGAAGACATTTTTAGATCAAGCAGATGAGTCCATTGGCATCTCATCCATGATTGTTGAATCATTGGATGGAGTGAGCTATGCCCGGCCCCTGGATTCTGGTGCAAATGATCTGAGTTGCTCCTCTATAAGTAAGCTATCTTTAGAACCATTTTCTTTGTCAAAAGCAACTGTATCTGTACAAGATGATGTGAAAATAGAATCGAGCATTGCAGCGAAAGCATTAAGTGAGATTGATTATCAGTGTACATTGTTTGGACCAACAAATTTGAAAGATCCGGTTCTTTCTAACTCTACAAGCCTTAAAGTTTCAGAAAGTTCAAAATCTGAAAAAGCAAGCAAGGGAAGGTCCAAGACCTCTGACTCAGCAAAAAGGAATGGAAATGCTCCAAGACAGAGAGATAATCAGCGGAAGTCTGTAGATAAGAATAAGCTCAAGAAAGTTTGTGATTATGCTGAGTCTACTGGAGTAACGTACCCAGAATCAGGAAATTTTATGGTTAACAGTATCAGAAAGACAAGCAGCAGTGATAATTTAGCGGTCAGAGAAGTATCAAACTTGAACATTGTTAATGATGTTTTGAATGAGAAGTATTCACTGGCCAAAAATGCTTGGGTTCTCTGCGATGATTGTCAGAAATGGCGTCGAATACCAGCTGGTCTTGTAGATTCCATTGGACAAGAAAGTTGTACTTGGACCTGCAAGGACAACACTGATAAATCATTTGCTGATTGTTCAATCCCTCAAGAAAAATCAAATGTAGAAATCAATGCTGAGCTGGAAATAACAGACGCCTCTGGTGATGACGAAGCTTCACGTGCCCGCCGAACTTATAGACTATCTGAAAATCAGCAGTCAAAAGTTTTACAAGAGCGTGGATATACAAGAATCAAAAGCAATCATTATCTGCACCGAACTCGTAAATCCCAGACTATCGATGAGATAATGATTTGCCATTGCAAAGCACCTTCTAATGGCAAGGTTGGCTGTGGAGATGAATGCTTGAATCGCATGCTTAATATTGAATGTAACCGAGGCACATGCCCTTGCGGGGATCTATGTTCTAATCTACAGTTTCAAAAACGCAACTACGCAAAGTTAGGGCGTTTAAAATGTGGGAAAAAGGGTTTTGGATTGCAACTGCTTGAGGATATATCCCAAGGACAATTCCTCATTGAATATGTCGGAGAGGTGCTTGACATGCCTGCTTATGAGGCTCGACAGAAAGAATATGCTATGTATGGCCATCGACATTTCTACTTCATGACCTTGAATTGCAATGAGGTAATAGATGCGTCTGCTAAAGGAAATTTGGGTCGTTTCATTAATCATAGTTGTGAACCTAATTGTCGCACAGAAAAGTGGATGGTGAACGGAGAAATTTGTATTGGGCTGTTCGCTTTAAGGGATATTAAGAAGGGTGAAGAGGTGACTTTTGACTACAATTATGTGAGGGTTTTTGGTGCAGCTGCTAAAAAATGTTACTGTGGTTCTGCTCACTGTCGTGGCTCTATAGGTGGGGATCCACTTAATTCTGGAGTTATTGTTCAGAGTGATTCGGATGAAGATTATTTGGAACCTTTGATGCTTCTTGAAGATGGTAAAGCCAATGATGGTTTGTCCATTCCAGCAAGTTCCTTCGATTATCCTGAAACTCTTACTGTAGAGAGTATATCAAATACTAAAGATGAAGTGGATACACTTAGATCTTCTGTTAAGCACTTAGACATTACAAGAGAACAAGATGAACCATTAAATGACTCTGACTTTATTGTTCCTCAATCACAAAGCTCACTTGTATATGAGAAACTAATGGTAAAAGTACCTTCTGCAAGTCAAGTGCTTGAAAGTTCTCAGCAAACAGATATAACCAGTAAAACCACGTCTACTGCTGATCCAGACATCATTGTTCAGAGTCCATCTCACAAAAATTCTTGCATCGCTGAAGATATCGAGCCTTCTTGTCTAAATTCAATGAACAATAAGTCATTGTCTGATGGTTGTGATTCTAGTAAGAAGTTTGATGCAATTGAACACAAGCGGGTGTCTTCAAAGCGACGCCCTCTTGTGAAGACTTCACGTAAATCTGGCTTTATTAAGAAAGGAAATGTGACTAATGATCCTTTACATTCCAACAAAGTACCTGTATCGGTCAACAAACTGCTATCTGTGAAGCCAAAGAAAATAATGGAAGCTTCAGGTCGCTTTGAAGCAGTTGAGGAGAAACTTAATGAGTTGCTGGACGCTTGTGGGGGGATAAGCAAAAGAAAGGACGCTGCCAAGGGCTACTTGAAGCTATTGCTTCTCACTGCAGCCTCAGGTGATAGAGTTAGTGGCGAAGCTATTCAAAGCAATAGAGACCTCTCAATGATCCTTGATGCTCTTTTAAAGACAAAGTCGCGAGTGGTACTGACTGATATCATTAATAAAAATGGTCTGCAGATGTTGCACAACATGATGAAACAATATAGGTGTGATTTCAAAAAGATTCCTATCCTTCGAAAGCTTCTTAAGGTGTTAGAGTATTTGGCAGTGAGAGAGATAGTTTCTTCGGAGCATATTAATGCTGGTCCTCGCTGTCTAGGAATGGAAAGTTTTGCGGAGTCTATGCTGTCACTGACGGAGCATGATGACAAGCAGGTCCATCATATTGCAAGAAAGTTTCGGGACAGATGGATTCATAGACCTCTCAGAAAATTTATCAAGGAGAGGGATGCTGGGAGGATGGAACTACACAAAGGTCCAACAGAAACCAATGATGGTGTCAAGCAATTAGTGGTTGCTGATGCTGCTATACATATTAATGTCGGACCAGGCTGTTCTATATCTCCTACGAATGATCATATAGATACCCCCAAACCTCGTAAACGTAAGAGTCGATGGGATCAGCCAACAGCTTCTATAGCAGAGTCAAGAGCTCTTCACCCCATGGAACAGAAATTAGAATCCAGTCTATCGAATGGGGTAGGGGACATAATAGTTGTTTGTGGAGACAAAGTTAACAGCAGTGTGGAAAGTAATTCTCTTGTCCACCACTTCTGTCAACACCACAAGACCAAGTCAGACGATGGAGATCTAAACAACACAGATGATGTTCCTCCAGGATTTTCATCTCCACTTTACTCTATAGAATCTTCAAATGCTTCGCCTGCTGCTGTTGATCTACCTCAATCAATTAATGGCCTTTCAAAATGTTTTTCTACTGTAGCTGGGCATCTTCAAGAGAAATTTATTTCTCGTTTGCCTGTTTCCTATGGAGTTCCATTGTCTATTGTGCAACAATTTGGGACAGCACAAGCTGAAAATCTGGAAAATTGGATTATTGCTCCAGGAATGCCTTTTCATCCTTTTCCCCCTCTGCCACCGTCTAACCAGGAAAAGAAAATATCTCCTCCTCATGCTCCAATTAAGAAACGGCCAGAGGAAAAACAGTGGGATAACTTTGGTCCTCACACTAGTTATGAAGGTGAAAGTTCTGGCTCAGTAGTTTCTAACCAACCATTTTTAGATGGTCCACCTGGAAGCAATCAACACCCAACTAAGCGAGCCAGGGGATCGTCCTGCGATCTAGGAAAAAGGCACTTCAAACAGCAAAAGTGGGATAATGCTTGCGATGGCCCTCCTTGGTTACAGAGAAGGAACGACTGGGGATATCTAGAGAATATTCAAGAGGGTCAATATCCTCCCCTGCCGTAG 5727 40.27 MGSYDFTTVVGEPMCGPTIVDFSEKLVSEHQPCPNSGSVYCLLEANSNEVDNCPNLSRDDILLSNAIEPTGDWLVTQCKNPDESILSNELYSKCGISGVSLDENWVETDSCNMKSGKLMQCDEYGLLNTTDGFKLTSEIIARDTSSGFFIQQNEENANNGVGGSPETIVKEVTEEKKLDLIEIEADTGGFLSPSRGSEISLNSMVPLINYCFQKNELKDTNGITGFVVPDKLEPFNKFASTLRDHIELLLPKACDSLMHSVMDSGNMDDKHVIGFSTEKNIEGAGLENGFDNSCVTIIPSMGCQKTDEILQHDGSLTTITQESECLEEKSCIGSLGQSSLEVAKNCNHITMNSKVDVAKNAMPLERNSNLKEGFITGNSIAEKSTSQELCHPFDFRDDGSSEMMNTQNIMNTQNISVGDATFLSSKRGCDSSGQIDYGSRDNFRVDCVPEVNCAEAVASTSGLNNVQRSKSVRKSRTKKSTKRSKGERKVPHSCRNVQIIFEAARRKRTCLSKPSRSTIWGSLSCTQSSWESSEVQIQQFQDQELMKGRKGRHNAKRNKNERKRRSKGSKREKCSTSTGCLRLKVKLGKQMDQSFLNIMIPDVDTSLSATATNSSCGTEPYWKTSFDFPKLTKHDECKVVEGAPSKHVNSKENPDNLHCTLSSIQLENNVSIDPIITPKTFLDQADESIGISSMIVESLDGVSYARPLDSGANDLSCSSISKLSLEPFSLSKATVSVQDDVKIESSIAAKALSEIDYQCTLFGPTNLKDPVLSNSTSLKVSESSKSEKASKGRSKTSDSAKRNGNAPRQRDNQRKSVDKNKLKKVCDYAESTGVTYPESGNFMVNSIRKTSSSDNLAVREVSNLNIVNDVLNEKYSLAKNAWVLCDDCQKWRRIPAGLVDSIGQESCTWTCKDNTDKSFADCSIPQEKSNVEINAELEITDASGDDEASRARRTYRLSENQQSKVLQERGYTRIKSNHYLHRTRKSQTIDEIMICHCKAPSNGKVGCGDECLNRMLNIECNRGTCPCGDLCSNLQFQKRNYAKLGRLKCGKKGFGLQLLEDISQGQFLIEYVGEVLDMPAYEARQKEYAMYGHRHFYFMTLNCNEVIDASAKGNLGRFINHSCEPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCYCGSAHCRGSIGGDPLNSGVIVQSDSDEDYLEPLMLLEDGKANDGLSIPASSFDYPETLTVESISNTKDEVDTLRSSVKHLDITREQDEPLNDSDFIVPQSQSSLVYEKLMVKVPSASQVLESSQQTDITSKTTSTADPDIIVQSPSHKNSCIAEDIEPSCLNSMNNKSLSDGCDSSKKFDAIEHKRVSSKRRPLVKTSRKSGFIKKGNVTNDPLHSNKVPVSVNKLLSVKPKKIMEASGRFEAVEEKLNELLDACGGISKRKDAAKGYLKLLLLTAASGDRVSGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLQMLHNMMKQYRCDFKKIPILRKLLKVLEYLAVREIVSSEHINAGPRCLGMESFAESMLSLTEHDDKQVHHIARKFRDRWIHRPLRKFIKERDAGRMELHKGPTETNDGVKQLVVADAAIHINVGPGCSISPTNDHIDTPKPRKRKSRWDQPTASIAESRALHPMEQKLESSLSNGVGDIIVVCGDKVNSSVESNSLVHHFCQHHKTKSDDGDLNNTDDVPPGFSSPLYSIESSNASPAAVDLPQSINGLSKCFSTVAGHLQEKFISRLPVSYGVPLSIVQQFGTAQAENLENWIIAPGMPFHPFPPLPPSNQEKKISPPHAPIKKRPEEKQWDNFGPHTSYEGESSGSVVSNQPFLDGPPGSNQHPTKRARGSSCDLGKRHFKQQKWDNACDGPPWLQRRNDWGYLENIQEGQYPPLP 1908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4085197 4100738 - Bpe008469.1 Bpe02g00629 98778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00629 1908 SMART shorttest3 990 1041 IPR006560 GO:0005634|GO:0018024
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 545 575 - -
Bpe02g00629 1908 SMART set_7 1042 1165 IPR001214 GO:0005515
Bpe02g00629 1908 Gene3D - 879 937 - -
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 550 570 - -
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 1808 1825 - -
Bpe02g00629 1908 Pfam SET domain 1053 1159 IPR001214 GO:0005515
Bpe02g00629 1908 ProSiteProfiles Post-SET domain profile. 1167 1183 IPR003616 -
Bpe02g00629 1908 SMART PostSET_3 1167 1183 IPR003616 -
Bpe02g00629 1908 ProSiteProfiles Zinc finger CW-type profile. 876 930 IPR011124 GO:0008270
Bpe02g00629 1908 SUPERFAMILY SET domain 969 1180 IPR046341 -
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 464 492 - -
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 773 818 - -
Bpe02g00629 1908 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 465 1861 - -
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 1626 1640 - -
Bpe02g00629 1908 Coils Coil 1406 1426 - -
Bpe02g00629 1908 ProSiteProfiles AWS domain profile. 990 1040 IPR006560 GO:0005634|GO:0018024
Bpe02g00629 1908 Pfam AWS domain 1005 1039 IPR006560 GO:0005634|GO:0018024
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 1616 1647 - -
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 1294 1314 - -
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 1794 1869 - -
Bpe02g00629 1908 PANTHER SET DOMAIN PROTEINS 465 1861 - -
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 784 818 - -
Bpe02g00629 1908 Pfam CW-type Zinc Finger 882 928 IPR011124 GO:0008270
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 1828 1860 - -
Bpe02g00629 1908 Gene3D SET domain 938 1197 IPR046341 -
Bpe02g00629 1908 MobiDBLite consensus disorder prediction 471 489 - -
Bpe02g00629 1908 CDD SET_SETD2 1041 1183 IPR044437 GO:0010452|GO:0046975
Bpe02g00629 1908 ProSiteProfiles SET domain profile. 1042 1159 IPR001214 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00629 - - - qsu:111999241 1239.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00629 Bpe-Chr2:4085197 Bpe02g01103 Bpe-Chr2:14638943 6.43E-54 dispersed
Bpe15g00331 Bpe-Chr15:14835121 Bpe02g00629 Bpe-Chr2:4085197 3.17E-13 dispersed
Bpe02g00629 Bpe-Chr2:4085197 Bpe07g00196 Bpe-Chr7:1351753 2.02E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20904 PF00856 SET 1.60E-17 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00629 Bpe_Chr02 FPKM 2.368928 2.691223 3.396815 3.179557 2.663396 2.722966 2.588738 3.432144 3.26064 3.204333