Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00630 ATGGGGAGAGGAAAGATCGAGATCAAGAGGATTGAAAACTCAAGTAACAGGCAGGTGACTTATACAAAAAGAAGGAATGGGTTGTTGAAGAAAGCCAACGAGATTACTATTCTGTGCGATGCTCAAGTTTCCCTCGTTATCTTTGCTGCTACTGGAAGGATGCATGAATTCCATAACCCTTCCATACCTTTGATTGATATCTTGGACAAGTATCACAAGCTGTCTGGAGAGAGGCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATCGATCGGATCAAGAAAGAAAACGACAGCATGCAGATCGAGCTCAGGCATATGAAGGGAGAGGATCTCACCTCCTTGAACTACAAGGAGCTCATGGCCCTCGAAAACGCCCTCGAAAGCGGCCTCAACGGTGTTCGTGAGAAACAGGCTTGTATCCTGCAAACCCATTTCTTTAACATGGAATACCAGAAGGAGATGGTGGGGATGGGAGAGAACGTAAGAGAGATGGAAAATGGGTACCAGCAGAGGATGAGGGAGTTCAATGAGCTGCCATTTTCATTCAGAGTTCAGCCAATTCAGCCTAATCTGCAAGAGAGGATCTAA 594 45.45 MGRGKIEIKRIENSSNRQVTYTKRRNGLLKKANEITILCDAQVSLVIFAATGRMHEFHNPSIPLIDILDKYHKLSGERLWDAKHENLSNEIDRIKKENDSMQIELRHMKGEDLTSLNYKELMALENALESGLNGVREKQACILQTHFFNMEYQKEMVGMGENVREMENGYQQRMREFNELPFSFRVQPIQPNLQERI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4110782 4112724 - Bpe008470.1 Bpe02g00630 98779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00630 197 Coils Coil 84 111 - -
Bpe02g00630 197 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Bpe02g00630 197 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Bpe02g00630 197 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bpe02g00630 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe02g00630 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 - -
Bpe02g00630 197 Pfam K-box region 82 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g00630 197 ProSiteProfiles K-box domain profile. 84 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g00630 197 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 196 - -
Bpe02g00630 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe02g00630 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe02g00630 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe02g00630 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe02g00630 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe02g00630 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00630 Bpe04g00229 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00367 Bpe-Chr2:2414262 Bpe02g00630 Bpe-Chr2:4110782 4.62E-40 dispersed
Bpe02g00630 Bpe-Chr2:4110782 Bpe04g00229 Bpe-Chr4:1552256 1.55E-39 dispersed
Bpe02g00630 Bpe-Chr2:4110782 Bpe06g00030 Bpe-Chr6:367437 9.43E-43 transposed
Bpe02g00630 Bpe-Chr2:4110782 Bpe10g00142 Bpe-Chr10:2896564 6.46E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20905 PF01486 K-box 2.50E-17 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00630 K09264 - csv:101222239 304.679