Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00642 ATGGTCTCTGCCTCCTCCTCCGCCTCCCTCGCTCTGTCAACTACTACCGCCATGTCTGCCATAGCCACTGCTGCTGCTCTCGCTATTCCCATTTCTTCGTCCCGATCATCGTCTCTTTACACGAAGAAGGGTCTTAAAGGGGGATTCGGGGTGTTTGCAGTTTACGGAGAGGAGACAGCTTTGGCGAGGAAGAGTGGATGGAGTACGCTATTCGATGTGGAGGATCCAAGGTCCAAATTCCATCGATCCAAAGGAGCTCTTCAAGTCGTTTTATTCGATCTTCAGTACTGTGATTGGCGGGCTCGTCAGGATGTTCTCGCCATCATGCTCCTCCATGACAAGGTTGTGGAAGTTCTTAATCCTCTAGCTCGAGATTACAAGTCCATTGGTACATTGAAGAAGGATCTAGCTGAGTTGCAGGATGAATTAGCACAAGCTCACAGACAGGCTCACGTATCTGAGGCTAGGGTTGCCACTGCGTTGGATAAACTAGCTTATATGGAAACGCTGGTAAATGATAAGTTGTTGGAAGACAGAAAAAGGAAAGAAGTGGATAACTCTCCCCCTTCTGCAACTCGGTCTTCTCGATCTACCGAAGCTCTCAATGGGAGACCTCAAAGGAAAAGCTTGAACGTGTCTGGACCTGTTCAACCTTATCATCCTCACTTAAAAAACTTCTGGTACCCTATCGCTTTCTCGAATGATTTGAAGATTGACACCATGATTCCATTAGATTGTTTCGAACAGTCGTGGGTTATCTTCCGCGGAAAGGATGGCAACCCTGGATGTGTTAAGAACACATGTGCACACAGAGCCTGCCCTCTTGACCTCGGTTCCATAAATGAGGGTCGAATCCAATGTCCCTATCATGGGTGGGAATACTCAACGGACGGAAAATGTGAAAAAATGCCATCAACACGATTACTCGATGTGAAGATAAAGTCGTTGCCGTGTTTCGAGAAAGAAGGGATGATCTGGATTTGGCCTGGAAATGACCCTCCAGCAGTTGAACTTCCTTCTTTACAGCCCCCTCCAGGCTTTCAAATCCACGCCGAGCTTATCATGGAGCTTCCAGTGGAACACGGATTACTTCTCGATAATCTTTTGGATCTTGCCCATGCTCCTTTCACTCACACTTCAACCTTCGCCAAGGGATGGACGGTGCCCAGTTTGGTGAAATTTTTGACCCCTGCTTCTAGTCTGCAAGGATATTGGGAACCATATCCAATAGACATGGAGTTTCGGCCGCCTTGTATGGTGCTATCCACCATAGGAATCTCGAAGCCTGGGAAACTCGAAGGGCGGAGTACAAGACAATGTGCTACTCACCTTCACCAACTTCACGTCTGCTTACCTTCTTCGAGACACAAAACCCGCCTTTTGTATAGAATGTCGCTAGATTTTGCCCCACTGCTCAAGTACATTCCTTTCATGCATTATCTCTGGAGGCATTTTGCAGAACAGGTTTTGAATGAGGATCTAAGGCTTGTGATTGGTCAACAAGACCGCATGATAAACGGTGAGAATATCTGGAACATGCCCGTTTCTTATGACAAGTTGGGAATCCGATACAGGCTATGGAGAGATGCAGTGGACAAGGGAGCTAAGATATTGCCTTGTACGAACTCAAATTGA 1635 47.09 MVSASSSASLALSTTTAMSAIATAAALAIPISSSRSSSLYTKKGLKGGFGVFAVYGEETALARKSGWSTLFDVEDPRSKFHRSKGALQVVLFDLQYCDWRARQDVLAIMLLHDKVVEVLNPLARDYKSIGTLKKDLAELQDELAQAHRQAHVSEARVATALDKLAYMETLVNDKLLEDRKRKEVDNSPPSATRSSRSTEALNGRPQRKSLNVSGPVQPYHPHLKNFWYPIAFSNDLKIDTMIPLDCFEQSWVIFRGKDGNPGCVKNTCAHRACPLDLGSINEGRIQCPYHGWEYSTDGKCEKMPSTRLLDVKIKSLPCFEKEGMIWIWPGNDPPAVELPSLQPPPGFQIHAELIMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWTVPSLVKFLTPASSLQGYWEPYPIDMEFRPPCMVLSTIGISKPGKLEGRSTRQCATHLHQLHVCLPSSRHKTRLLYRMSLDFAPLLKYIPFMHYLWRHFAEQVLNEDLRLVIGQQDRMINGENIWNMPVSYDKLGIRYRLWRDAVDKGAKILPCTNSN 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4192533 4195237 - Bpe008479.1 Bpe02g00642 98791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00642 544 Coils Coil 129 156 - -
Bpe02g00642 544 MobiDBLite consensus disorder prediction 179 214 - -
Bpe02g00642 544 Pfam Pheophorbide a oxygenase 414 508 IPR013626 GO:0010277
Bpe02g00642 544 MobiDBLite consensus disorder prediction 188 213 - -
Bpe02g00642 544 SUPERFAMILY ISP domain 222 332 IPR036922 GO:0051537
Bpe02g00642 544 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 268 290 IPR015881 GO:0005506|GO:0051537
Bpe02g00642 544 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 81 540 - -
Bpe02g00642 544 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 81 540 - -
Bpe02g00642 544 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 227 327 IPR017941 GO:0051537
Bpe02g00642 544 CDD Rieske_RO_Alpha_Cao 210 335 - -
Bpe02g00642 544 Gene3D - 221 342 IPR036922 GO:0051537
Bpe02g00642 544 SUPERFAMILY Bet v1-like 323 530 - -
Bpe02g00642 544 Gene3D - 345 536 - -
Bpe02g00642 544 Pfam Rieske [2Fe-2S] domain 227 308 IPR017941 GO:0051537
Bpe02g00642 544 Pfam Vanillate O-demethylase oxygenase C-terminal domain 360 384 IPR044043 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00642 K13600 CAO; chlorophyllide a oxygenase [EC:1.14.13.122] - csv:101205768 871.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00642 Bpe04g00006 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00642 Bpe-Chr2:4192533 Bpe04g00097 Bpe-Chr4:695747 1.94E-25 dispersed
Bpe01g00704 Bpe-Chr1:5291174 Bpe02g00642 Bpe-Chr2:4192533 8.14E-06 transposed
Bpe02g00642 Bpe-Chr2:4192533 Bpe04g00006 Bpe-Chr4:79513 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00642 Bpe_Chr02 FPKM 111.5056 118.274498 151.77475 147.799515 160.690613 176.168655 159.112045 187.471634 202.54686 194.146103