Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00697 ATGAACAACACAGACTACCCCGGCCTTCTCCCCACCAGCAACATCGGCGGCATCGGCTATGGAATCGGGGTCTCTGTGGGTCTTCTCCTCCTCATCACCACCATCGTCCTCGCTTCCTACTTCTGCTCCCGAACAGCTAACTTGACGTCTCCTTCTCCCGGTATTAGGAGGACCAGGATGACCCAGCAGTTTACGGGAAGCGCGGAGGTGGTGCTTGAAATAGGGCTTAGCGAGGAAACGATCGAAAGCTACCCGAAGATGGTGTTTTCAGAGGCGAAGATGGAGAGGAAAGAGGGCATAGCTACGAGCTGCTCCATCTGTTTGGGTGATTATAGAAGCTCCGACGTGCTTCGGCAATTGCCAGATTGTCGCCATTTTTTCCACCTGAAATGTGTTGATCCGTGGCTGAGGCTTAATCCATCTTGTCCACTCTGTAGAACATCGCCGTATCCGACGCCACTTTCGACTCCTCTAGCGGAGGTTGTTCCATTAGCCAGTAGCAGAGATCGGTAG 513 53.22 MNNTDYPGLLPTSNIGGIGYGIGVSVGLLLLITTIVLASYFCSRTANLTSPSPGIRRTRMTQQFTGSAEVVLEIGLSEETIESYPKMVFSEAKMERKEGIATSCSICLGDYRSSDVLRQLPDCRHFFHLKCVDPWLRLNPSCPLCRTSPYPTPLSTPLAEVVPLASSRDR 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4718331 4718843 - Bpe008535.2 Bpe02g00697 98846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00697 170 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Bpe02g00697 170 CDD RING-H2_PA-TM-RING 104 146 - -
Bpe02g00697 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
Bpe02g00697 170 Pfam Ring finger domain 103 146 IPR001841 -
Bpe02g00697 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 169 IPR045899 -
Bpe02g00697 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 169 - -
Bpe02g00697 170 SUPERFAMILY RING/U-box 80 152 - -
Bpe02g00697 170 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00697 Bpe-Chr2:4718331 Bpe05g01005 Bpe-Chr5:22774800 7.79E-38 dispersed
Bpe05g00706 Bpe-Chr5:20634286 Bpe02g00697 Bpe-Chr2:4718331 4.23E-18 dispersed
Bpe04g01934 Bpe-Chr4:24246336 Bpe02g00697 Bpe-Chr2:4718331 3.45E-26 transposed
Bpe02g00697 Bpe-Chr2:4718331 Bpe03g01187 Bpe-Chr3:30796715 3.58E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00697 - - mdm:103454174 199.904