Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00700 ATGAACGACTTGCTTTCCTCTACTTCATTCCCCAGGGATGAACACGTCATCGAGATGACAGGACCGCCGGCATCCTCTCCGGCTTCCCATATGGGGAAATTCTTCAACGATGTCGAAGCCATTAAGGAAGATCTTAGAGAGCTGGAGCTCCTCCGTGAAAATCTGCAGAACTCTCACGAGCAGAGCAAAGCTCTTCACAGCACTAGGGCGGTTAAAGAGCTCCGGTCAAAAATGGACGCGGACGTTTCTATGGCTCTGAGCAAGGCGAAGCTGATCAAGGCTCAGCTCGAGGCTCTCGACCAATCAAACGTCGCGAATCGGAATTTGCCTGCTTGCGGCGTCGGGTCGTCGTCGGACCGAACGCGAACCTCTGTAGTAAATGGGCTGAGAAAGAATTTAAAGAACTCGATGGAGAGCTTTACCGCTCTGAGGGAGAAGATCTCGTCGGAGTATAGAGACACCGTGCAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAGACCATTGATCTATTGATCTCCACTGGCGAAAGCGAGACGTTCTTACAGAAAGCAATACAAGAGCAAGGGAGAGGGAGAATCCTAGACACCATAAACGAGATTCAGGAGCGACAAGATGCAGTGAGAGAGCTGGAGGAGAATCTGAAGGGGCTTCACCAGGTCTTCCTGGACATGGCCGTCCTGGTCCAGGCTCAGGGGGAGCAACTAGACGACATCGAGAGCCAGGTGACGCGTGCTCATTCGACCGTCAAAGACGGTACCCGCCAGTTGCAAAAGGCAAGGACCCTCCAGAAGAACACTAGAAAATGGGTTATTATTGCCATCATCATTTTGCTGGTCATCATCTTCATCGCCGTTCTCAGTGCTCAGCCATGGAAGTAG 891 51.85 MNDLLSSTSFPRDEHVIEMTGPPASSPASHMGKFFNDVEAIKEDLRELELLRENLQNSHEQSKALHSTRAVKELRSKMDADVSMALSKAKLIKAQLEALDQSNVANRNLPACGVGSSSDRTRTSVVNGLRKNLKNSMESFTALREKISSEYRDTVQRRYFTVTGENPDEKTIDLLISTGESETFLQKAIQEQGRGRILDTINEIQERQDAVRELEENLKGLHQVFLDMAVLVQAQGEQLDDIESQVTRAHSTVKDGTRQLQKARTLQKNTRKWVIIAIIILLVIIFIAVLSAQPWK 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4746882 4748408 - Bpe008539.1 Bpe02g00700 98849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00700 296 MobiDBLite consensus disorder prediction 1 30 - -
Bpe02g00700 296 Coils Coil 197 224 - -
Bpe02g00700 296 Gene3D - 198 292 - -
Bpe02g00700 296 PANTHER SYNTAXIN 8 290 IPR045242 -
Bpe02g00700 296 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
Bpe02g00700 296 SMART tSNARE_6 196 263 IPR000727 -
Bpe02g00700 296 Pfam SNARE domain 237 288 IPR000727 -
Bpe02g00700 296 SMART SynN_4 26 152 IPR006011 GO:0016020
Bpe02g00700 296 CDD SNARE_syntaxin1-like 200 262 - -
Bpe02g00700 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Bpe02g00700 296 Coils Coil 38 65 - -
Bpe02g00700 296 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Bpe02g00700 296 CDD SynN 31 188 IPR006011 GO:0016020
Bpe02g00700 296 Gene3D - 28 161 - -
Bpe02g00700 296 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 8 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00700 Bpe-Chr2:4746882 Bpe08g00351 Bpe-Chr8:2103594 3.27E-113 dispersed
Bpe02g00700 Bpe-Chr2:4746882 Bpe03g01190 Bpe-Chr3:30806605 1.19E-142 wgd
Bpe02g00700 Bpe-Chr2:4746882 Bpe04g00619 Bpe-Chr4:3961756 7.27E-169 wgd
Bpe02g00700 Bpe-Chr2:4746882 Bpe04g01486 Bpe-Chr4:21389123 3.89E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00700 K08486 - csv:101208931 407.912