Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00874 ATGGCGGAAGAATTGAAGCTGTTTGGAGCAACGGGAAGCCCATTCAGCCACAGAGTGGAGGTGGCTCTGAAACTGAAAGGCGTCGAATATGAATACGTCGAAGAAGACGTGTACGGAACCAAAAGCTCAGAGCTTCTGAAATACAATCCGGTTCACAAGAAGATTCCCGTGCTTCTGCACAACGGGAAGCCCTTGGCTGAATCCCTCGTCATTCTTGACTACATCGACGACGCGTTCGGAGGTTATCCTCTCTTGCCAAAGGATCCGTACGACAAAGCCATGGCTCGATTCTGGGCCAAGTTCTTCGACGACAAGGTCCGTCCGAGCTTATGGAAAGCTTACTGGAGTGAGGGGGAGGAGCGAGAAAAGGCGGTGGAGGAGGCGAAGGAGGTTCTAAAAATCCTAGAAAATGAGCTGGGCGATAAGCGATTCTTCGGAGGAGAGGCGGTCGGATATGTCGACATTGCTGCCAACTCCTTAAGCTTTTGGTATGGGATTTTTCAAGAAGTAGTCGGACTTGAATTGCTGACCAGTAACGACTTCCCCAAGCTCTGCCAATGGCGGGAGGAGTTTGTTAGTCAGAGCTGTGTCAAAGAAACTCTGCCTGGGAAGGAAAGCTTACTCGCATTGATGCAATCTCGTTTCGCCAAGAAGAAACTCGAATGTCCTTAA 672 50.0 MAEELKLFGATGSPFSHRVEVALKLKGVEYEYVEEDVYGTKSSELLKYNPVHKKIPVLLHNGKPLAESLVILDYIDDAFGGYPLLPKDPYDKAMARFWAKFFDDKVRPSLWKAYWSEGEEREKAVEEAKEVLKILENELGDKRFFGGEAVGYVDIAANSLSFWYGIFQEVVGLELLTSNDFPKLCQWREEFVSQSCVKETLPGKESLLALMQSRFAKKKLECP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6728495 6729235 + Bpe008712.1 Bpe02g00874 99023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00874 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 214 IPR045073 -
Bpe02g00874 223 Coils Coil 118 138 - -
Bpe02g00874 223 CDD GST_C_Tau 89 214 IPR045074 GO:0004364|GO:0006749
Bpe02g00874 223 Gene3D - 85 220 - -
Bpe02g00874 223 SUPERFAMILY GST C-terminal domain-like 77 216 IPR036282 -
Bpe02g00874 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Bpe02g00874 223 Gene3D Glutaredoxin 1 84 - -
Bpe02g00874 223 Pfam Glutathione S-transferase, C-terminal domain 118 194 IPR004046 -
Bpe02g00874 223 SFLD Glutathione Transferase (cytosolic) 2 219 IPR040079 -
Bpe02g00874 223 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Bpe02g00874 223 SFLD Main.3: Omega- and Tau-like 2 219 IPR045073 -
Bpe02g00874 223 CDD GST_N_Tau 5 79 - -
Bpe02g00874 223 PANTHER GLUTATHIONE S-TRANSFERASE-RELATED 4 214 - -
Bpe02g00874 223 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Bpe02g00874 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 220 IPR010987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00874 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - tcc:18597654 271.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00874 Bpe-Chr2:6728495 Bpe03g00861 Bpe-Chr3:28407574 4.43E-51 dispersed
Bpe04g01862 Bpe-Chr4:23796353 Bpe02g00874 Bpe-Chr2:6728495 2.07E-07 transposed
Bpe06g00366 Bpe-Chr6:15163496 Bpe02g00874 Bpe-Chr2:6728495 4.12E-68 transposed
Bpe11g01706 Bpe-Chr11:13332090 Bpe02g00874 Bpe-Chr2:6728495 3.88E-11 transposed
Bpe12g00457 Bpe-Chr12:10322389 Bpe02g00874 Bpe-Chr2:6728495 2.44E-50 transposed
Bpe02g00874 Bpe-Chr2:6728495 Bpe04g00756 Bpe-Chr4:4840940 2.84E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g818 . . . . . . . . . . . . . . Sed14g0672 Cpe10g00921 . Bhi03g02067 Tan03g0877 Cmetu08g0998 . Hepe04g0806 . . . . . . . . . . . . . Lsi01g01488 Csa04g01560 Chy08g00694 . . . . . . Bpe02g00874 . . . . Cmo07g01074 . . . . . . . . . . . . . . . . . . . . . . . Cme08g02468
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00515 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 5.1e-63 237.7
Bpe06g00513 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 9.6e-62 233.4
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 2.3e-63 238.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.4 3.3e-62 235.0
Bpe06g00513 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 5.4e-59 224.6
Bpe06g00515 . 5 206 Glutathione S-transferase Gene Family AT1G02950 55.2 9.1e-59 223.8
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 8.8e-60 226.9
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.0e-59 225.7
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.8 2.3e-60 228.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 4.0e-60 228.0
Bpe06g00513 . 1 213 Glutathione S-transferase Gene Family AT2G47730 58.9 1.9e-67 252.7
Bpe06g00515 . 1 213 Glutathione S-transferase Gene Family AT2G47730 57.9 1.2e-66 250.0
Bpe11g01239 . 1 212 Glutathione S-transferase Gene Family AT3G03190 58.5 6.7e-71 263.8
Bpe11g01239 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.3 7.1e-73 270.4
Bpe02g00874 . 3 216 Glutathione S-transferase Gene Family AT3G09270 57.2 9.1e-71 263.5
Bpe12g00457 . 3 226 Glutathione S-transferase Gene Family AT1G74590 50.4 1.6e-65 246.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.9 1.0e-90 329.7
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G78380 64.7 1.2e-83 306.2
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78380 64.4 4.6e-83 304.3
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78370 63.1 2.7e-80 295.0
Bpe09g00277 . 1 218 Glutathione S-transferase Gene Family AT1G78370 61.9 1.0e-79 293.1
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78370 61.2 3.4e-78 288.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.8 4.9e-85 310.8
Bpe09g00277 . 1 217 Glutathione S-transferase Gene Family AT1G78340 63.6 1.5e-81 299.3
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78340 59.7 3.4e-78 288.1
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78320 53.7 1.9e-61 232.3
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78320 52.3 1.5e-58 222.6
Bpe09g00277 . 1 211 Glutathione S-transferase Gene Family AT1G78320 51.2 3.2e-56 214.9
Bpe09g00278 . 1 219 Glutathione S-transferase Gene Family AT1G17180 64.4 1.8e-87 318.9
Bpe03g00861 . 2 220 Glutathione S-transferase Gene Family AT1G17180 63.0 1.2e-83 306.2
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G17180 61.9 8.7e-82 300.1
Bpe09g00278 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.6 3.2e-76 281.6
Bpe03g00861 . 4 218 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00277 . 3 215 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00278 . 3 214 Glutathione S-transferase Gene Family AT3G43800 53.7 1.3e-64 243.0
Bpe09g00277 . 3 217 Glutathione S-transferase Gene Family AT3G43800 52.5 1.4e-63 239.6
Bpe03g00861 . 4 215 Glutathione S-transferase Gene Family AT3G43800 50.5 2.1e-59 225.7
Bpe09g00278 . 4 219 Glutathione S-transferase Gene Family AT1G53680 59.2 2.4e-71 265.4
Bpe09g00277 . 4 217 Glutathione S-transferase Gene Family AT1G53680 58.1 2.3e-69 258.8
Bpe03g00861 . 6 220 Glutathione S-transferase Gene Family AT1G53680 54.8 5.0e-69 257.7
Bpe11g01706 . 60 231 Glutathione S-transferase Gene Family AT2G02390 57.0 8.4e-57 216.9
Bpe13g00917 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.9 4.9e-49 191.0
Bpe11g01706 . 18 230 Glutathione S-transferase Gene Family AT2G02380 60.1 3.7e-72 268.1
Bpe13g00917 . 15 223 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-61 233.4
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41210 67.2 2.6e-95 345.1
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41240 67.2 4.5e-93 339.0
Bpe04g01862 . 8 223 Glutathione S-transferase Gene Family AT5G02780 63.8 1.8e-77 285.8
Bpe04g01862 . 6 225 Glutathione S-transferase Gene Family AT3G55040 67.0 7.9e-83 303.9
Bpe04g01862 . 2 227 Glutathione S-transferase Gene Family AT5G02790 63.4 2.4e-82 302.0
Bpe15g01095 . 1 211 Glutathione S-transferase Gene Family AT1G19570 66.0 1.7e-82 302.4
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G19570 57.7 9.6e-78 286.6
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G19570 58.9 8.7e-71 263.5
Bpe15g01095 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.0 3.3e-86 314.7
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G75270 64.5 3.4e-83 304.7
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G75270 58.9 7.9e-72 266.9
Bpe02g01375 . 2 215 Glutathione S-transferase Gene Family AT5G16710 75.7 8.3e-100 360.1
Bpe04g01694 . 3 232 Glutathione S-transferase Gene Family AT5G16710 54.3 2.6e-69 258.8
Bpe15g01095 . 3 210 Glutathione S-transferase Gene Family AT5G16710 56.7 4.4e-69 258.1
Bpe02g00628 . 1 268 Glutathione S-transferase Gene Family AT1G77290 66.5 2.4e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00874 Bpe_Chr02 FPKM 12.143873 13.632715 9.93064 10.011583 7.465404 7.237735 6.969168 8.488152 9.577824 9.14278