Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00909 ATGGATATGGCTACGAGTCCACGCACCGTTGAGGAGATCTGCAGAGATTACAGTGCCAGAAGAACTGGTGTTGTCCGCACTTTGACTCTTGATGTGGATGAATTCTATAGTCTCTGTGATCCAGACAAGGAAAACTTGTGTCTTTACGGACACTCAAATGAAGCCTGGGAAGTAACTCTTCTTGCAGAGGAGGTTCCACCCGAGCTTCCGGAGCCAGTACTTGGAATAAATTTTGCGAGAGATGGGATGAATCGCAAAGACTGGATTTCGTTAGTCGCTGTGCACAGTGATTCATGGTTGCTTGCTGTAGCTTTCTATCGTAGAGCCCGTCTTAACAAGGCCGAAAGTTCAATTACTATTCTCTTGATCAATGATTTAACAACTGTCTTTGAAGTTGTGACTGAGAGAAAGCCTATTGAAGAGAACCCCAGTGTGGACAGTGGAAGCAAATCTAGATCAAGCACAAAGAGTTCCTGGTTTCTGCAGAGATCAAATGATGGTCAAGTGAAAAACAACCCAAAAGCTACAGAAGAAAATTGTGAAGACGAAGTAGAACTCAATGAAACCCTCTGTGGGAGCTGTGGCGGGAATTACAGTGCAGATGAGTTCTGGATTGGTTGTGATGTATGTGAAAGGTGGTTCCACGGGAAGTGCGTCAAGATAACACCTGCTAAGGCTGAGAGCATAAAGCAATACAAGTGCCCATCTTGCAGCATGAAGAAAGGTAGACAGTGGACTTAA 741 44.67 MDMATSPRTVEEICRDYSARRTGVVRTLTLDVDEFYSLCDPDKENLCLYGHSNEAWEVTLLAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLAVAFYRRARLNKAESSITILLINDLTTVFEVVTERKPIEENPSVDSGSKSRSSTKSSWFLQRSNDGQVKNNPKATEENCEDEVELNETLCGSCGGNYSADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCSMKKGRQWT 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7559355 7561393 + Bpe008749.1 Bpe02g00909 99058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00909 246 ProSitePatterns Zinc finger PHD-type signature. 191 237 IPR019786 -
Bpe02g00909 246 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 243 - -
Bpe02g00909 246 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Bpe02g00909 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 238 IPR013083 -
Bpe02g00909 246 CDD PHD_AL_plant 190 240 IPR044104 -
Bpe02g00909 246 PANTHER CPG BINDING PROTEIN 3 243 IPR045104 GO:0006355|GO:0042393
Bpe02g00909 246 SUPERFAMILY FYVE/PHD zinc finger 184 244 IPR011011 -
Bpe02g00909 246 SMART PHD_3 190 238 IPR001965 -
Bpe02g00909 246 ProSiteProfiles Zinc finger PHD-type profile. 188 240 IPR019787 -
Bpe02g00909 246 Pfam PHD-finger 191 239 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00909 Bpe-Chr2:7559355 Bpe04g01807 Bpe-Chr4:23499448 1.71E-116 dispersed
Bpe03g01140 Bpe-Chr3:30405445 Bpe02g00909 Bpe-Chr2:7559355 2.95E-89 transposed
Bpe02g00909 Bpe-Chr2:7559355 Bpe04g00775 Bpe-Chr4:4982058 6.74E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20927 PF12165 Alfin 7.80E-57 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00909 - - cit:102609983 364.77