Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00942 ATGGAGGGGACTGATAGCGATCCGGACTCCTATCGAACTCCTTCCGCAAGTGACACTCGAAGATACGGGATGCTATCTGCTTCTAATATAATTCAAGCACCACTCTCGGCACTGCTGGAGTATTCTGGTCTTCTTCGAGGACGATCGAGTTTCCAAGAAACAGAGCCTTTGGTGAATGGCCGTATACACTCAGGGTTTCGCGATCGGCTACATAGGCAGCTTGGGGAATCTACGGGTGCCAACAATGATGGGGAGGTTTCTATCAGGATAATCGGTGCTGGAGAAGAACTTGAACGGGAAGCCACTGGGTTAGTTGTCGGTCAATCTAGGGAAGTTGCTTCCCAAAATGAGGTATCTATGCCGCAATCAATTCCGGGGTTGACCTTGACAACATTAGCCTCGGAAGGCGGTCAGGAAGATTCTAGAACTGAGGGACGTGCAGAGGAAGGCATTTCCCAATCAGCCAATGGCGGTTTTTTTGGGCAAACCACAGATGGATCTGGGGCAAATGGCAGAGATTCTTCTTACCAAAGGTACGATATTCAGCAGGCAGCTAGGTGGGTTGAGCAGGTCCTCCCTTTCAGTTTACTCTTGTTGGTTGTCTTCATCCGGCAACATTTACAAGGATTCTTTGTGACAATTTGGATAACCGCTGTTATGTTTAAGTCAAATGATATCCTACGGAAACAGACAGCTCTTAAGGGTGAGAGGAAACTTTCTGTTTTGATTAGCATCACTCTTGCATTTACAATGCACGTGGTGGGTGTTTACTGGTGGTACCAGAATGACGATCTTCTGTATCCACTGGTTATGCTTCCTCCCAGAACAATTCCTCCGTTTTGGCATGCGATTTTTATCATTATGGTTAATGATACCTTGGTTCGGCAGGCAGCGATGGCATTCAAGTGTGTTCTGTTAATTCATTTCAAGAACAGTAGGGGACGTCAATATCGCAAACAGGGTCAAATGCTGACATTAATTGAGTATCTGCTTCTGCTATACCGTGCCCTATTGCCCACTCCTGTATGGTATCGTTTCTTCTTGAACAAAGATTATGGAAGTTTGTTTTCATCACTGATGACGGGATTGTATTTAACTTTTAAGCTCACGTCCATTGTTGAAAAGCTGCAATCTTTCTTTGCAGCGGCGAAGGCATTGTCACGAAAAGAGGTGCATTATGGGGCCTATGCAACATCAGAGCAGGTCAATGCAGCAGGTGATCTGTGTGCTATTTGCCAGGAGAAGATGCATACTCCTGTCCTACTTTGTTGCAAGCACATCTTCTGCGAGGACTGTGTATCGGAATGGTTTGAGAGAGAGAGAACATGCCCATTGTGCAGGGCTCTGGTGAAACCTGCAGATCTGAGGTCATTTGGTGACGGATCAACCAGTTTGTTTTTCCAGTTGTTT 1410 46.03 MEGTDSDPDSYRTPSASDTRRYGMLSASNIIQAPLSALLEYSGLLRGRSSFQETEPLVNGRIHSGFRDRLHRQLGESTGANNDGEVSIRIIGAGEELEREATGLVVGQSREVASQNEVSMPQSIPGLTLTTLASEGGQEDSRTEGRAEEGISQSANGGFFGQTTDGSGANGRDSSYQRYDIQQAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWITAVMFKSNDILRKQTALKGERKLSVLISITLAFTMHVVGVYWWYQNDDLLYPLVMLPPRTIPPFWHAIFIIMVNDTLVRQAAMAFKCVLLIHFKNSRGRQYRKQGQMLTLIEYLLLLYRALLPTPVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSIVEKLQSFFAAAKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHTPVLLCCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8327128 8334698 + Bpe025108 Bpe02g00942 99091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00942 470 ProSiteProfiles Zinc finger RING-type profile. 409 447 IPR001841 -
Bpe02g00942 470 Pfam Zinc finger, C3HC4 type (RING finger) 407 450 - -
Bpe02g00942 470 CDD RING-HC_RNFT1_like 408 447 - -
Bpe02g00942 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 457 IPR013083 -
Bpe02g00942 470 MobiDBLite consensus disorder prediction 155 173 - -
Bpe02g00942 470 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 470 - -
Bpe02g00942 470 MobiDBLite consensus disorder prediction 132 173 - -
Bpe02g00942 470 SUPERFAMILY RING/U-box 402 452 - -
Bpe02g00942 470 SMART ring_2 409 446 IPR001841 -
Bpe02g00942 470 ProSitePatterns Zinc finger RING-type signature. 424 433 IPR017907 -
Bpe02g00942 470 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 470 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00942 Bpe-Chr2:8327128 Bpe07g00981 Bpe-Chr7:15551630 2.74E-07 dispersed
Bpe03g00056 Bpe-Chr3:941354 Bpe02g00942 Bpe-Chr2:8327128 1.68E-11 transposed
Bpe11g01594 Bpe-Chr11:12003360 Bpe02g00942 Bpe-Chr2:8327128 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00942 - K22379 csv:101205267 714.916