Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00950 ATGGCTTCACCGTCTCTCCTCCTGCTGCTCTCGTGCTGTCTAGCATGCATTGCTTTGTCCTTGCAGGAGAACTCCTATACCGCCAGCACTCCCAAGCCCAACCTGAAAGCGTTGAACGTAATCGACGCTTGCTGGCGCTCCAAGCCCAATTGGGCAGCCAACCGACGGTCATTGGCAGACTGCGCAGTCGGTTTTGGAAATGACGCTCTTGGAGGGAAGTTTGGAGCTATCTACGTTGTTACTGATTCTTCCGACGACCCGGTGAACCCAAAACCCGGGACGTTACGCTACGGTGTGATTCAGTTAAAGCCATTGTGGATCGTTTTTGCTAGAAGCATGGTTATTGTACTAAAAAATGAGCTTATTGTGACTAGTTACAAGACAATTGATGGGAGAGGGGTGAATGTGGAAATCACATATGGACCCTGCATCACCTTGCAATACGTAAGCCATGTTATTATTCATGGAATCAGCATTCACGACTGTAAACCAGGTAAGGCCGGGCTTGTTCGGAGCAGCACCGCACATGTCGGACGTCGTCAAGGGTCGGATGGAGACGCCATTTCCATCTACGGGTCTTCTAATATTTGGATAGACCACTGCTTCCTCGCCCACTGCGCTGACGGCCTCATCGATATCATACATGCTTCTACTGCAATCACCATCTCTAACAACTACTTCACTCAGCATGACAAAGTGATGCTGCTCGGACACAATGATAAGTACGCGGATGATAAAGTGATGAAAGTCACCATAGCTTTCAACCGCTTCGGTGCTGGCCTCATTGAAAGGATGCCCAGGGTAAGATTTGGCTACGCCCATGTTGCCAACAATAAATATGAGCAGTGGCAGATGTACGCCATTGGTGGAAGTGCTAATCCAACCATATTCAGTGAAGGAAACTACTTCGTGGCACCTAATCGACGTTTTTCGAAACAGGTTACAAAAAGAGAGGTGAATAGTGGTTGGAAGGACTGGAAATGGAGGTCATCTCGGGATGTATTTATGAATGGTGCTTACTTTGTGCAATCTGGATGGGGAAGTTGTAATCCAAATTACAGTTCAGATCAGTCGTTCCCGGTTGCTCCAGGCGCCTTGGTTCCTGCTTTAACTGTCGGTGCAGGACCTTTAGTTTGCTACATTGGTAAAGCATGCTGA 1158 48.1 MASPSLLLLLSCCLACIALSLQENSYTASTPKPNLKALNVIDACWRSKPNWAANRRSLADCAVGFGNDALGGKFGAIYVVTDSSDDPVNPKPGTLRYGVIQLKPLWIVFARSMVIVLKNELIVTSYKTIDGRGVNVEITYGPCITLQYVSHVIIHGISIHDCKPGKAGLVRSSTAHVGRRQGSDGDAISIYGSSNIWIDHCFLAHCADGLIDIIHASTAITISNNYFTQHDKVMLLGHNDKYADDKVMKVTIAFNRFGAGLIERMPRVRFGYAHVANNKYEQWQMYAIGGSANPTIFSEGNYFVAPNRRFSKQVTKREVNSGWKDWKWRSSRDVFMNGAYFVQSGWGSCNPNYSSDQSFPVAPGALVPALTVGAGPLVCYIGKAC 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8589691 8591361 + Bpe008792.1 Bpe02g00950 99099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00950 385 Gene3D - 38 378 IPR012334 -
Bpe02g00950 385 SUPERFAMILY Pectin lyase-like 39 375 IPR011050 -
Bpe02g00950 385 PANTHER PECTATE LYASE 22 384 - -
Bpe02g00950 385 PANTHER PECTATE LYASE 18-RELATED 22 384 IPR045032 GO:0030570
Bpe02g00950 385 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Bpe02g00950 385 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Bpe02g00950 385 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Bpe02g00950 385 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Bpe02g00950 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Bpe02g00950 385 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Bpe02g00950 385 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Bpe02g00950 385 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Bpe02g00950 385 SMART amb_all 112 309 IPR002022 -
Bpe02g00950 385 Pfam Pectate lyase 119 303 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00950 Bpe-Chr2:8589691 Bpe09g00408 Bpe-Chr9:6572920 1.97E-149 dispersed
Bpe04g00722 Bpe-Chr4:4653723 Bpe02g00950 Bpe-Chr2:8589691 2.85E-48 dispersed
Bpe02g00950 Bpe-Chr2:8589691 Bpe08g00306 Bpe-Chr8:1832348 1.20E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00950 K01728 - jre:108979226 603.208