Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00962 ATGGGGTCTGGAGGTAGAGAAATGCGTACGCCTGCTGGTTCTTCTTCAGGTGCTAGTAACATGAGGCCTTACAACACCAACGCAGCTCCTATTACCGACAAAAACAAAGCGATTGCACGGTATAATGCTGACGCTAGGCTTTTGGCTGAGTTTGAGCAGTCTACTGAATCTGGCAAGTCTTTTAATTACTCGAGATCAGTTTTACATTGTCTTGAATCTGTGCCTGAAGAACAAATTACTGTTTATTTGTCGAGAATCCAAAGGGGTGGTCTGATTCAGCCCTTTGGTTGCATGATCGCTGTGGAAGAAATCAGTTTTAAAATCATTAGCTACAGTGAGAACTGCTCTGGCCTTTTGGGTCTAAAGTATCAATCGGAGTTAACACGGACAAAAAGTCTGATTGGAATTGATGTTAGAACATTTTTTACTTCTTCTTCGGCTACGTCTTTAGCGAAAGCTGCTGCATTCAGAGAGCTTTCACTCTTGAACCCTGTATGGGTTTACTCTAGGACAACCCAGAAGCCATTTTATGCGATATTGCACAGAATTGATGTGGGGATCGTGATCGATTTGGAACCTGCAAGGTCGGGTGATCCTGCATTATCACTTGCGGGTGCCGTTCAGTCTCAGAAACTAGCTGTTCGTGCAATTTCTAGACTGCAATCTCTCCCCGGAGGTGATATTGGTGCTTTGTGCGACACAGTTGTGGAAGACGTTCAGAAGCTTACTGGGTATGATAGGGTCATGGTTTACAAATTCCATGACGATGACCATGGTGAGGTTGTTTCCGAAATTAGAAGGTCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTGCCTCAGATATCCCCCAAGCTGCCCGTTTTCTGTTCAAGCAAAATCGAATTCGTATGATCTGCAATTGCCAAGAAAAGCCAGTCAAGATCATTCAAAGTGAAGATCTGAAGCAGTCTCTATGCTTGGTCAATTCAACTCTTCGATCACCTCATGGCTGCCATACTCAATATATGGCCAACATGGGCTCTATCGCATCCCTAGTAATGGCAGTCATCATAAATAGTAACAAGGGAACGACAAAGCTTTGGGGACTAGTTGTGTGTCACCACACCTCACCCCGATACATCCCTTTCCCTCTTCGTTATGCTTGTGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAACTGGCATTGCAGTTGATGGAAAAGAAAATTCTCAAAACTCAAACCTTACTCTGTGATATGCTCCTTCGAGATGCTCCTTATAGTCTAATGACTCAATCTCCGAGCATAATGGATCTTGTGAAATGTGATGGGGCTGCATTGTACTACGGTGGGACTTGTTGGCTTCTGGGTGTCACACCATCTGAATCACAAGTTATAGATATTGCAGAGTGGCTTCTTAGTAATCATGGGGATTCTAGTGGGTTGAGCATGGATAGTTTAGCCGATGCTGGATATCGAGGTGCAGCTTCGCTGGGCGATGCAGTGTGTGGCATGGCAGCAGCAAGAATCTCATCGAAGGATTTCTTATTCTGGTTCAGATCTCATACGGCTAAGGAAGTCAAGTGGGGAGGAGCAAAACATCATCCAGAAGATAAGGATGATAGTGGAAAAATGCACCCAAGGTCGTCTTTCAATGCCTTTCTTGAAGTTGTCAAAAGTAAAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCATTCATTCTCTGCAACTTATGATGAGAGACTCGTTTCAGGAAATCGGAAACAGCAGTGAAAAAGGTTTTGGCAGTTCCCAGCTGAGTGATTCTAAGATGCAGGGTGTGGATGAACTCAGCTCAGCTGCATGGGAAATAGTTAAATTGATTGAGACAGCCATGGTTCCAATTTTTGGGGTTGATACGGTAGGGCTAATTAATGGATGGAATGCTAAAATTGCTGAACTGACAGGACTAGAATCTAGTAAAGCCATGGGAAAATCTTTGGTGGACGAAATTGCTCATGAGGATTCACGGCAAGTGGTTGGCAGTCTCATCAGTCGTGCTTTGCAAGGTGAAGAAGAAAGAGATGTTGAGTTGAAACTGAGAAATTTTATGGATAATAAAAGAAACTCCGCCTTGTACATTATGGTCAACTCCTGCACAAGCAGAGACAGCAAGAACAAAGTGATTGGTGTTTGCTTCGTGGGTCACGATATTACATTGGAGAAAGTCGTTATGGATAAATTTATTCGACTCGAAGGAGACTACAAAGCTATAATTCAAAGTCTTAACCCTTTGATTCCACCCATATTTGCCTCTGATGAGAATGCCTGCTGCTCAGAGTGGAATGCAGCCATGGAAAAACTAACAGGCTGGAAACGATATGAAGTAATAGGAAAAATGCTGCCCGGGGAAATTTTCGGTAGTTTCTGTCAATTAAAAGGCCAAGATACGTTGACCAAGTTTATGATTTCACTTTATAAAACCATTGGTGGTCAAGAAACCGAGGACCTTCCATTTGGATTTTTTGATCGAAAAGGAATATTTGTGAAGGTGTTCTTGACGGCAAACAAGAGGACTGATGGCGATGGGGAGATCATCGGCTGTTTCTGCTTCTTGCAGATTGTTGTGCCGGAAGTGTTTCAGGCTGCAGAAGAACATATGGAGGATGTTGGAGAGAGCTTTCTGCAATTGACGGAGTTGGCATATATTCAACAGGAGATAAAGAATCCTTTGAATGGCATTAGATTTACTCACAAGCTTCTTGAGAGTAGTTGCCTTACAGAAAATCAGAAACTATTTCTTAATACTAGTGATGCATGTGAGAGACAGATCATGATGGTCGCTGAGGATATGAACTTGAGAAGATTAGAAGGAGGAAGTATAGAGCTGAATATTGAAGAATTTGGGCTGGGGAATGTTTTGGATGCGATTGTCAGTCAAATCATGATCCTCATGAGGGAGAAGAAGGTACAGCTTTTACATGAAATTCCTGGAGAAATCAAATCACTGACCCTTCACGGTGATCAAATTAAGTTACAGATAGTCTTGTCGGACTTTTTGCTCAATGTAGTGAATCACACACCTTCTCCGGGTGGTTGGGTAGAAATCAACGTCTCGACTGGTTTAATATCAATGGAGGATGACGCAGACATTATCCACTTGCAGTTCAGAATGACACACCCTGGTGAAGGGCTGCCTTCAACTTTGGTCCAAGACATGTTTGGAGGGAATGAGTTTAATTCACACGAAGGTCTTGGACTAAACCTCTCAAGAAAACTTCTGAAGAAGATGAATGGTAATGTTCATTATGTCAAAGAAGATAGTAAATGCTGTTTCCTCGTTGATCTTGAGCTTAAAATGAAGAAAGATAACCCCGAATTGCCTAAATCTCGACCCATCGATTGA 3384 42.73 MGSGGREMRTPAGSSSGASNMRPYNTNAAPITDKNKAIARYNADARLLAEFEQSTESGKSFNYSRSVLHCLESVPEEQITVYLSRIQRGGLIQPFGCMIAVEEISFKIISYSENCSGLLGLKYQSELTRTKSLIGIDVRTFFTSSSATSLAKAAAFRELSLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPASDIPQAARFLFKQNRIRMICNCQEKPVKIIQSEDLKQSLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVIINSNKGTTKLWGLVVCHHTSPRYIPFPLRYACEFLMQAFGLQLYMELQLALQLMEKKILKTQTLLCDMLLRDAPYSLMTQSPSIMDLVKCDGAALYYGGTCWLLGVTPSESQVIDIAEWLLSNHGDSSGLSMDSLADAGYRGAASLGDAVCGMAAARISSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDSGKMHPRSSFNAFLEVVKSKSLPWEVSEINAIHSLQLMMRDSFQEIGNSSEKGFGSSQLSDSKMQGVDELSSAAWEIVKLIETAMVPIFGVDTVGLINGWNAKIAELTGLESSKAMGKSLVDEIAHEDSRQVVGSLISRALQGEEERDVELKLRNFMDNKRNSALYIMVNSCTSRDSKNKVIGVCFVGHDITLEKVVMDKFIRLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKRYEVIGKMLPGEIFGSFCQLKGQDTLTKFMISLYKTIGGQETEDLPFGFFDRKGIFVKVFLTANKRTDGDGEIIGCFCFLQIVVPEVFQAAEEHMEDVGESFLQLTELAYIQQEIKNPLNGIRFTHKLLESSCLTENQKLFLNTSDACERQIMMVAEDMNLRRLEGGSIELNIEEFGLGNVLDAIVSQIMILMREKKVQLLHEIPGEIKSLTLHGDQIKLQIVLSDFLLNVVNHTPSPGGWVEINVSTGLISMEDDADIIHLQFRMTHPGEGLPSTLVQDMFGGNEFNSHEGLGLNLSRKLLKKMNGNVHYVKEDSKCCFLVDLELKMKKDNPELPKSRPID 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8964442 8968890 - Bpe008808.1 Bpe02g00962 99111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00962 1127 TIGRFAM sensory_box: PAS domain S-box protein 620 735 IPR000014 -
Bpe02g00962 1127 SMART pas_2 615 682 IPR000014 -
Bpe02g00962 1127 SMART pas_2 746 815 IPR000014 -
Bpe02g00962 1127 Gene3D PAS domain 616 735 - -
Bpe02g00962 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 727 IPR035965 -
Bpe02g00962 1127 Gene3D PAS domain 85 330 - -
Bpe02g00962 1127 SUPERFAMILY GAF domain-like 207 394 - -
Bpe02g00962 1127 ProSiteProfiles PAS repeat profile. 613 684 IPR000014 -
Bpe02g00962 1127 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Bpe02g00962 1127 Pfam Phytochrome region 411 584 IPR013515 GO:0006355|GO:0009584
Bpe02g00962 1127 Gene3D - 403 576 IPR043150 -
Bpe02g00962 1127 ProSiteProfiles PAC domain profile. 687 743 IPR000700 -
Bpe02g00962 1127 SMART HKATPase_4 1000 1113 IPR003594 -
Bpe02g00962 1127 MobiDBLite consensus disorder prediction 9 29 - -
Bpe02g00962 1127 Pfam His Kinase A (phospho-acceptor) domain 893 952 IPR003661 GO:0000155|GO:0007165
Bpe02g00962 1127 SMART gaf_1 227 408 IPR003018 GO:0005515
Bpe02g00962 1127 CDD PAS 626 731 IPR000014 -
Bpe02g00962 1127 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1000 1110 IPR003594 -
Bpe02g00962 1127 CDD PAS 758 866 IPR000014 -
Bpe02g00962 1127 Gene3D - 928 1106 IPR036890 -
Bpe02g00962 1127 Pfam PAS fold 747 866 IPR013767 GO:0006355
Bpe02g00962 1127 Pfam PAS fold 618 731 IPR013767 GO:0006355
Bpe02g00962 1127 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 945 1109 IPR036890 -
Bpe02g00962 1127 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 227 388 IPR016132 -
Bpe02g00962 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 196 IPR035965 -
Bpe02g00962 1127 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 242 261 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 142 164 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 327 348 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PIRSF Phytochrome_conventional 14 1120 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bpe02g00962 1127 CDD HisKA 893 944 IPR003661 GO:0000155|GO:0007165
Bpe02g00962 1127 Pfam GAF domain 227 398 IPR003018 GO:0005515
Bpe02g00962 1127 SMART HisKA_10 888 952 IPR003661 GO:0000155|GO:0007165
Bpe02g00962 1127 CDD HATPase_Phy-like 1000 1111 IPR044767 -
Bpe02g00962 1127 SUPERFAMILY GAF domain-like 406 585 - -
Bpe02g00962 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 761 865 IPR035965 -
Bpe02g00962 1127 ProSitePatterns Phytochrome chromophore attachment site signature. 327 336 IPR013516 -
Bpe02g00962 1127 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1117 - -
Bpe02g00962 1127 ProSiteProfiles Histidine kinase domain profile. 895 1113 IPR005467 -
Bpe02g00962 1127 Gene3D - 208 559 IPR029016 -
Bpe02g00962 1127 PANTHER PHYTOCHROME E 34 1117 - -
Bpe02g00962 1127 MobiDBLite consensus disorder prediction 1 29 - -
Bpe02g00962 1127 Pfam PAS fold 82 194 IPR013654 GO:0006355
Bpe02g00962 1127 Gene3D PAS domain 760 870 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00962 Bpe-Chr2:8964442 Bpe14g00730 Bpe-Chr14:5663226 5.21E-08 dispersed
Bpe02g01845 Bpe-Chr2:20583218 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
Bpe05g00798 Bpe-Chr5:21322307 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
Bpe07g00650 Bpe-Chr7:13229839 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
Bpe13g00697 Bpe-Chr13:13599291 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
Bpe11g01109 Bpe-Chr11:8295645 Bpe02g00962 Bpe-Chr2:8964442 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00962 K12123 - tcc:18596568 1657.11