Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00962 ATGGGGTCTGGAGGTAGAGAAATGCGTACGCCTGCTGGTTCTTCTTCAGGTGCTAGTAACATGAGGCCTTACAACACCAACGCAGCTCCTATTACCGACAAAAACAAAGCGATTGCACGGTATAATGCTGACGCTAGGCTTTTGGCTGAGTTTGAGCAGTCTACTGAATCTGGCAAGTCTTTTAATTACTCGAGATCAGTTTTACATTGTCTTGAATCTGTGCCTGAAGAACAAATTACTGTTTATTTGTCGAGAATCCAAAGGGGTGGTCTGATTCAGCCCTTTGGTTGCATGATCGCTGTGGAAGAAATCAGTTTTAAAATCATTAGCTACAGTGAGAACTGCTCTGGCCTTTTGGGTCTAAAGTATCAATCGGAGTTAACACGGACAAAAAGTCTGATTGGAATTGATGTTAGAACATTTTTTACTTCTTCTTCGGCTACGTCTTTAGCGAAAGCTGCTGCATTCAGAGAGCTTTCACTCTTGAACCCTGTATGGGTTTACTCTAGGACAACCCAGAAGCCATTTTATGCGATATTGCACAGAATTGATGTGGGGATCGTGATCGATTTGGAACCTGCAAGGTCGGGTGATCCTGCATTATCACTTGCGGGTGCCGTTCAGTCTCAGAAACTAGCTGTTCGTGCAATTTCTAGACTGCAATCTCTCCCCGGAGGTGATATTGGTGCTTTGTGCGACACAGTTGTGGAAGACGTTCAGAAGCTTACTGGGTATGATAGGGTCATGGTTTACAAATTCCATGACGATGACCATGGTGAGGTTGTTTCCGAAATTAGAAGGTCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTGCCTCAGATATCCCCCAAGCTGCCCGTTTTCTGTTCAAGCAAAATCGAATTCGTATGATCTGCAATTGCCAAGAAAAGCCAGTCAAGATCATTCAAAGTGAAGATCTGAAGCAGTCTCTATGCTTGGTCAATTCAACTCTTCGATCACCTCATGGCTGCCATACTCAATATATGGCCAACATGGGCTCTATCGCATCCCTAGTAATGGCAGTCATCATAAATAGTAACAAGGGAACGACAAAGCTTTGGGGACTAGTTGTGTGTCACCACACCTCACCCCGATACATCCCTTTCCCTCTTCGTTATGCTTGTGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAACTGGCATTGCAGTTGATGGAAAAGAAAATTCTCAAAACTCAAACCTTACTCTGTGATATGCTCCTTCGAGATGCTCCTTATAGTCTAATGACTCAATCTCCGAGCATAATGGATCTTGTGAAATGTGATGGGGCTGCATTGTACTACGGTGGGACTTGTTGGCTTCTGGGTGTCACACCATCTGAATCACAAGTTATAGATATTGCAGAGTGGCTTCTTAGTAATCATGGGGATTCTAGTGGGTTGAGCATGGATAGTTTAGCCGATGCTGGATATCGAGGTGCAGCTTCGCTGGGCGATGCAGTGTGTGGCATGGCAGCAGCAAGAATCTCATCGAAGGATTTCTTATTCTGGTTCAGATCTCATACGGCTAAGGAAGTCAAGTGGGGAGGAGCAAAACATCATCCAGAAGATAAGGATGATAGTGGAAAAATGCACCCAAGGTCGTCTTTCAATGCCTTTCTTGAAGTTGTCAAAAGTAAAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCATTCATTCTCTGCAACTTATGATGAGAGACTCGTTTCAGGAAATCGGAAACAGCAGTGAAAAAGGTTTTGGCAGTTCCCAGCTGAGTGATTCTAAGATGCAGGGTGTGGATGAACTCAGCTCAGCTGCATGGGAAATAGTTAAATTGATTGAGACAGCCATGGTTCCAATTTTTGGGGTTGATACGGTAGGGCTAATTAATGGATGGAATGCTAAAATTGCTGAACTGACAGGACTAGAATCTAGTAAAGCCATGGGAAAATCTTTGGTGGACGAAATTGCTCATGAGGATTCACGGCAAGTGGTTGGCAGTCTCATCAGTCGTGCTTTGCAAGGTGAAGAAGAAAGAGATGTTGAGTTGAAACTGAGAAATTTTATGGATAATAAAAGAAACTCCGCCTTGTACATTATGGTCAACTCCTGCACAAGCAGAGACAGCAAGAACAAAGTGATTGGTGTTTGCTTCGTGGGTCACGATATTACATTGGAGAAAGTCGTTATGGATAAATTTATTCGACTCGAAGGAGACTACAAAGCTATAATTCAAAGTCTTAACCCTTTGATTCCACCCATATTTGCCTCTGATGAGAATGCCTGCTGCTCAGAGTGGAATGCAGCCATGGAAAAACTAACAGGCTGGAAACGATATGAAGTAATAGGAAAAATGCTGCCCGGGGAAATTTTCGGTAGTTTCTGTCAATTAAAAGGCCAAGATACGTTGACCAAGTTTATGATTTCACTTTATAAAACCATTGGTGGTCAAGAAACCGAGGACCTTCCATTTGGATTTTTTGATCGAAAAGGAATATTTGTGAAGGTGTTCTTGACGGCAAACAAGAGGACTGATGGCGATGGGGAGATCATCGGCTGTTTCTGCTTCTTGCAGATTGTTGTGCCGGAAGTGTTTCAGGCTGCAGAAGAACATATGGAGGATGTTGGAGAGAGCTTTCTGCAATTGACGGAGTTGGCATATATTCAACAGGAGATAAAGAATCCTTTGAATGGCATTAGATTTACTCACAAGCTTCTTGAGAGTAGTTGCCTTACAGAAAATCAGAAACTATTTCTTAATACTAGTGATGCATGTGAGAGACAGATCATGATGGTCGCTGAGGATATGAACTTGAGAAGATTAGAAGGAGGAAGTATAGAGCTGAATATTGAAGAATTTGGGCTGGGGAATGTTTTGGATGCGATTGTCAGTCAAATCATGATCCTCATGAGGGAGAAGAAGGTACAGCTTTTACATGAAATTCCTGGAGAAATCAAATCACTGACCCTTCACGGTGATCAAATTAAGTTACAGATAGTCTTGTCGGACTTTTTGCTCAATGTAGTGAATCACACACCTTCTCCGGGTGGTTGGGTAGAAATCAACGTCTCGACTGGTTTAATATCAATGGAGGATGACGCAGACATTATCCACTTGCAGTTCAGAATGACACACCCTGGTGAAGGGCTGCCTTCAACTTTGGTCCAAGACATGTTTGGAGGGAATGAGTTTAATTCACACGAAGGTCTTGGACTAAACCTCTCAAGAAAACTTCTGAAGAAGATGAATGGTAATGTTCATTATGTCAAAGAAGATAGTAAATGCTGTTTCCTCGTTGATCTTGAGCTTAAAATGAAGAAAGATAACCCCGAATTGCCTAAATCTCGACCCATCGATTGA 3384 42.73 MGSGGREMRTPAGSSSGASNMRPYNTNAAPITDKNKAIARYNADARLLAEFEQSTESGKSFNYSRSVLHCLESVPEEQITVYLSRIQRGGLIQPFGCMIAVEEISFKIISYSENCSGLLGLKYQSELTRTKSLIGIDVRTFFTSSSATSLAKAAAFRELSLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPASDIPQAARFLFKQNRIRMICNCQEKPVKIIQSEDLKQSLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVIINSNKGTTKLWGLVVCHHTSPRYIPFPLRYACEFLMQAFGLQLYMELQLALQLMEKKILKTQTLLCDMLLRDAPYSLMTQSPSIMDLVKCDGAALYYGGTCWLLGVTPSESQVIDIAEWLLSNHGDSSGLSMDSLADAGYRGAASLGDAVCGMAAARISSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDSGKMHPRSSFNAFLEVVKSKSLPWEVSEINAIHSLQLMMRDSFQEIGNSSEKGFGSSQLSDSKMQGVDELSSAAWEIVKLIETAMVPIFGVDTVGLINGWNAKIAELTGLESSKAMGKSLVDEIAHEDSRQVVGSLISRALQGEEERDVELKLRNFMDNKRNSALYIMVNSCTSRDSKNKVIGVCFVGHDITLEKVVMDKFIRLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKRYEVIGKMLPGEIFGSFCQLKGQDTLTKFMISLYKTIGGQETEDLPFGFFDRKGIFVKVFLTANKRTDGDGEIIGCFCFLQIVVPEVFQAAEEHMEDVGESFLQLTELAYIQQEIKNPLNGIRFTHKLLESSCLTENQKLFLNTSDACERQIMMVAEDMNLRRLEGGSIELNIEEFGLGNVLDAIVSQIMILMREKKVQLLHEIPGEIKSLTLHGDQIKLQIVLSDFLLNVVNHTPSPGGWVEINVSTGLISMEDDADIIHLQFRMTHPGEGLPSTLVQDMFGGNEFNSHEGLGLNLSRKLLKKMNGNVHYVKEDSKCCFLVDLELKMKKDNPELPKSRPID 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8964442 8968890 - Bpe008808.1 Bpe02g00962 99111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00962 1127 TIGRFAM sensory_box: PAS domain S-box protein 620 735 IPR000014 -
Bpe02g00962 1127 SMART pas_2 615 682 IPR000014 -
Bpe02g00962 1127 SMART pas_2 746 815 IPR000014 -
Bpe02g00962 1127 Gene3D PAS domain 616 735 - -
Bpe02g00962 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 727 IPR035965 -
Bpe02g00962 1127 Gene3D PAS domain 85 330 - -
Bpe02g00962 1127 SUPERFAMILY GAF domain-like 207 394 - -
Bpe02g00962 1127 ProSiteProfiles PAS repeat profile. 613 684 IPR000014 -
Bpe02g00962 1127 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Bpe02g00962 1127 Pfam Phytochrome region 411 584 IPR013515 GO:0006355|GO:0009584
Bpe02g00962 1127 Gene3D - 403 576 IPR043150 -
Bpe02g00962 1127 ProSiteProfiles PAC domain profile. 687 743 IPR000700 -
Bpe02g00962 1127 SMART HKATPase_4 1000 1113 IPR003594 -
Bpe02g00962 1127 MobiDBLite consensus disorder prediction 9 29 - -
Bpe02g00962 1127 Pfam His Kinase A (phospho-acceptor) domain 893 952 IPR003661 GO:0000155|GO:0007165
Bpe02g00962 1127 SMART gaf_1 227 408 IPR003018 GO:0005515
Bpe02g00962 1127 CDD PAS 626 731 IPR000014 -
Bpe02g00962 1127 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1000 1110 IPR003594 -
Bpe02g00962 1127 CDD PAS 758 866 IPR000014 -
Bpe02g00962 1127 Gene3D - 928 1106 IPR036890 -
Bpe02g00962 1127 Pfam PAS fold 747 866 IPR013767 GO:0006355
Bpe02g00962 1127 Pfam PAS fold 618 731 IPR013767 GO:0006355
Bpe02g00962 1127 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 945 1109 IPR036890 -
Bpe02g00962 1127 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 227 388 IPR016132 -
Bpe02g00962 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 196 IPR035965 -
Bpe02g00962 1127 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 242 261 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 142 164 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PRINTS Phytochrome signature 327 348 IPR001294 GO:0006355|GO:0009584
Bpe02g00962 1127 PIRSF Phytochrome_conventional 14 1120 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bpe02g00962 1127 CDD HisKA 893 944 IPR003661 GO:0000155|GO:0007165
Bpe02g00962 1127 Pfam GAF domain 227 398 IPR003018 GO:0005515
Bpe02g00962 1127 SMART HisKA_10 888 952 IPR003661 GO:0000155|GO:0007165
Bpe02g00962 1127 CDD HATPase_Phy-like 1000 1111 IPR044767 -
Bpe02g00962 1127 SUPERFAMILY GAF domain-like 406 585 - -
Bpe02g00962 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 761 865 IPR035965 -
Bpe02g00962 1127 ProSitePatterns Phytochrome chromophore attachment site signature. 327 336 IPR013516 -
Bpe02g00962 1127 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1117 - -
Bpe02g00962 1127 ProSiteProfiles Histidine kinase domain profile. 895 1113 IPR005467 -
Bpe02g00962 1127 Gene3D - 208 559 IPR029016 -
Bpe02g00962 1127 PANTHER PHYTOCHROME E 34 1117 - -
Bpe02g00962 1127 MobiDBLite consensus disorder prediction 1 29 - -
Bpe02g00962 1127 Pfam PAS fold 82 194 IPR013654 GO:0006355
Bpe02g00962 1127 Gene3D PAS domain 760 870 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00962 K12123 PHYE; phytochrome E - tcc:18596568 1657.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00962 Bpe-Chr2:8964442 Bpe14g00730 Bpe-Chr14:5663226 5.21E-08 dispersed
Bpe02g01845 Bpe-Chr2:20583218 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
Bpe05g00798 Bpe-Chr5:21322307 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
Bpe07g00650 Bpe-Chr7:13229839 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
Bpe13g00697 Bpe-Chr13:13599291 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
Bpe11g01109 Bpe-Chr11:8295645 Bpe02g00962 Bpe-Chr2:8964442 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00409 . 493 1672 Histidine Kinase Gene Family AT2G17820 64.9 0.0e+00 1452.6
Bpe15g00478 . 564 1761 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1403.3
Bpe03g00033 . 17 996 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1351.3
Bpe14g00730 . 303 1276 Histidine Kinase Gene Family AT2G01830 52.3 6.5e-276 947.2
Bpe05g00945 . 57 1056 Histidine Kinase Gene Family AT2G01830 50.3 2.2e-263 905.6
Bpe02g00521 . 1 1048 Histidine Kinase Gene Family AT5G10720 53.8 5.4e-279 957.2
Bpe02g01845 . 2 1121 Histidine Kinase Gene Family AT1G09570 77.2 0.0e+00 1759.2
Bpe07g00650 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1253.0
Bpe05g00798 BCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1168.3
Bpe13g00697 BCT 29 1120 Histidine Kinase Gene Family AT1G09570 52.9 0.0e+00 1158.3
Bpe02g00962 . 36 1111 Histidine Kinase Gene Family AT1G09570 50.4 6.9e-313 1070.1
Bpe05g00798 BCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1636.3
Bpe13g00697 BCT 30 1084 Histidine Kinase Gene Family AT2G18790 75.0 0.0e+00 1599.7
Bpe02g00962 . 15 1050 Histidine Kinase Gene Family AT2G18790 61.9 0.0e+00 1279.6
Bpe11g01109 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.4 0.0e+00 1214.5
Bpe07g00650 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1111.3
Bpe02g01845 . 22 1056 Histidine Kinase Gene Family AT2G18790 51.2 1.4e-308 1055.8
Bpe07g00650 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1398.6
Bpe13g00697 BCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1124.4
Bpe05g00798 BCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.2 0.0e+00 1119.4
Bpe02g01845 . 10 1116 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1107.8
Bpe05g00798 BCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1655.2
Bpe13g00697 BCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.2 0.0e+00 1642.5
Bpe02g00962 . 35 1111 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1305.0
Bpe11g01109 . 20 1107 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1245.0
Bpe07g00650 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1144.8
Bpe02g00962 . 14 1112 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1396.3
Bpe11g01109 . 14 1108 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1327.0
Bpe05g00798 BCT 37 1119 Histidine Kinase Gene Family AT4G18130 59.1 0.0e+00 1258.8
Bpe13g00697 BCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.2 0.0e+00 1249.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00962 Bpe_Chr02 FPKM 27.735399 25.659441 22.071936 22.435753 18.328592 18.924341 18.794348 5.213646 5.445275 6.925278