Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01049 ATGGAACAGTTTAAATTGGCCGCAGCAACTCATTCTAAAGAGGATCATTCTGTAAAGGGCATTCAGACAATGGACCATTCTTCTGATTGCTCGAGGATTCCTCAACAACAGCAGATCTCAAGTAGATGGCTTCCAGATGAAGCATGCAGGCCTACCATTGGCGAAGCACCTGTATATTATCCGACTATTGAGGAGTTTGAAGATACACTTGGTTACATAGCAAAGATTCGTGAGGAAGCAGAATCATATGGTATATGTCGGATTGTTCCACCATCTTCATGGAATCCACCATGCATTCTCAAGGAGAAAGCCATACGGGAAAATGCCACATTTTCTACACGGATTCAGCTAGTTGACTTGCTACAAAACAGGGAACCCATGAGAAAAAAAGGTAGAGGCAGAAAAAGAAAACGAAGAAAGCATTCAAGAATGGGAACGTCAAGGAGGCACACAAATCCTGGTTCTGATGCAAACATTTCATCTGAGATTGATGAAAAATTTGGATTCAACTCTGGGTCGGATTTTACTCTAGCTGATTTTCAGAGACATGCTGATTACTTTAAAAAGTGCTACTTTGGAATGAAAGAGGCAGAGGATGAAGTAGATGCCAGTGAAATTAAACCAAAGAAGAGATGGGAACCCTCTGTAGAGGACATTGAAGGCGAGTACTGGCGGATAGTTGAGAAACCAACGGATGAGGTTGAGGTATACTATGGAGCTGACTTGGAGACTGGAGTATTTGGAAGTGGGTTCCCCAAGGCATCATCTGTATCAACTGAAAGCAATTCAGATGAGTATATGACTTCTGGTTGGAATCTTAATAACTTTCCACGCTTGCCAGGTTCTGTATTGTGCTTTGAAGGAAGTGATATCTCGGGAGTTCTGGTCCCATGGCTCTATATTGGGATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCCTTAAACTATCTACACTTGGGTGACCCAAAAGTTTGGTATGGTGTTCCTGGAAGCCATGCTTCTATCTTAGAAACTACAATGAAGAAGCATTTGCCAGATTTGTTTGAAGAACAGCCAGATTTACTGCATGAGTTGGTTACTCAGCTATCACCTTCAGTTCTCAAATCAGAAGGAGTGCCAGTATATCGTGCTGTTCAACATGCGAGGGAGTTTGTTCTGACATTTCCTAGGGCATATCATTCGGGATTCAATTGTGGTTTTAATTGTGCTGAGGCAGTGAATGTGGCACCTATTGATTGGTTGCTTCATGGTCAAAATGCAGTGGAGCTCTATAGCGAGCAGCGTCACAAGACATCAGTGTCCCATGACAAATTATTACTTGGTTCAGCTCAGGCAGCTGTTCAAGCTCTTCGGGAGATTTTTTTTCTTGGAAAGGAAACTCCTAGAACTTTTAGATGGAAATTTGTGTGTGGGAAAGATGGGGCCCTCACAAAGGCAGTGAAGGCCAGGATACAAATGGAGTCGGAGAGAATGGATTGCCTTCCAATTCATTTGAAGTTGAAAAAGATGGATAGAGAATTCGATTGGGAGGAGAGGGAATGCTTTTCTTGCTTTTACGACTTACACTTATCTGCGGTCAGCTGCAAGTGCTCTCCCTGTCGTTTTTCATGCCTTAAACATGCAAATAAATTTTGTTCTTGTGAAATAGATCAAAGATTTGTTCTCATTCGTTATAGTATAGAGGAACTTGATACACTTGTCGATGCCTTGGAAGGAGGATTAGAATCCATCAAACTATGGGCCACAGAGAACTGTCAAAAGATTTCTTCTTCCGTCAAAGAGGATTATCATGCAAATATGGAGTTAGAGAGAGAAACATGCAAATCTAAGTCAGACAACTCAGTAGAAAGATTTCTCATTTCCGAAGAAACAGAGAAGAAGATGAAAATAGATCTTAATTGTTGTTCATATAGTCATGTATCATCAGAAGTTGCGCAGTCAGAATTTCCAAACGGATTATCAAGTCTAAGTTCATTCCAGAAACCAAGTGGTAGTAGTAATGCAGTTATCAAATGTGAAAATGTAGACTTGGGAAAAGAAGATCAAATTGTAGACTTGAACAAAAGAGAAGGCTTTATCGATTTAAATCTTGATATTATGTGCATGGTTAAGGAAATTGGGTGTCTTGGCTCATCGGATGATAAAATAATTGAAAATAAAGTAGAGCAGATTCACTTGTCAGATGGTCGGCAAGATGCAAGTCCTTTTTCGGACAAAAATCATCCTTTGGGCTTGAGAGATTGTAGGAGACAAGATTTTGTTGGTAAGAAGCTGTTCGGGGCTGATGTTGGGTTTCCACTCATACATTCGAAATCAATACCTAGTAGTTTGTCAAAAATGAACGTTCAAGATTCCTTTGTACCAGAGGTAATAGACATTGGATCTGCCATGTTTGGAAACCTCTGGTGCAGTAGGCAGGCTATATTTCCAAAAGGATATAGAAGCCGTGTTAAATTCAAAAGTTTGCTTGATCCCATGGTTAGCGGCAGCTATATATCAGAAGTTCTTGATGCTGGGTTTCTGGGCCCTCTATTCAAGGTTACATCTGAGCAATATCCAAGGGAGTCTTTTGCAAACGTCTCTGCTGATAAGTGCTGGGAAATGGTTGTGCAGAGAATAAACCAGGAAATCGATAGAAAGATGGGTCAATGTAAAAGACTCCATCCTTTGCAGCCATTGCAAAGAATCAATGGGCTTCAAATGTTTGGTTTTCTCTCCCCACATATTAGACAGGCAATAGAGGCGCTCGATCCAGATCATAGATGCTTGGAGTATTGGAATAACTGGCAGTGCAATGGTGATATAAAAGTTAATTTTCCATCGAGTCACTCTTCAGAAATTTCTAGAACAAATGCCTTTGATATCTTAAAAGGAAGCCTTTCTCTAGACGAAGAATTTCAATCCGTGCTAAGAAGGCTGGTAAATAACGCAAGTAGAAGAGACCTAAGCATAATGCATAGCTTTTTCAGCCATGAACATAGAGTTGAAGAATGGAGATTGGCTCTAACATCAGTGATTGAAGAAAAGCTAAAAGACTTGGATAGATAA 3066 40.44 MEQFKLAAATHSKEDHSVKGIQTMDHSSDCSRIPQQQQISSRWLPDEACRPTIGEAPVYYPTIEEFEDTLGYIAKIREEAESYGICRIVPPSSWNPPCILKEKAIRENATFSTRIQLVDLLQNREPMRKKGRGRKRKRRKHSRMGTSRRHTNPGSDANISSEIDEKFGFNSGSDFTLADFQRHADYFKKCYFGMKEAEDEVDASEIKPKKRWEPSVEDIEGEYWRIVEKPTDEVEVYYGADLETGVFGSGFPKASSVSTESNSDEYMTSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHLGDPKVWYGVPGSHASILETTMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGVPVYRAVQHAREFVLTFPRAYHSGFNCGFNCAEAVNVAPIDWLLHGQNAVELYSEQRHKTSVSHDKLLLGSAQAAVQALREIFFLGKETPRTFRWKFVCGKDGALTKAVKARIQMESERMDCLPIHLKLKKMDREFDWEERECFSCFYDLHLSAVSCKCSPCRFSCLKHANKFCSCEIDQRFVLIRYSIEELDTLVDALEGGLESIKLWATENCQKISSSVKEDYHANMELERETCKSKSDNSVERFLISEETEKKMKIDLNCCSYSHVSSEVAQSEFPNGLSSLSSFQKPSGSSNAVIKCENVDLGKEDQIVDLNKREGFIDLNLDIMCMVKEIGCLGSSDDKIIENKVEQIHLSDGRQDASPFSDKNHPLGLRDCRRQDFVGKKLFGADVGFPLIHSKSIPSSLSKMNVQDSFVPEVIDIGSAMFGNLWCSRQAIFPKGYRSRVKFKSLLDPMVSGSYISEVLDAGFLGPLFKVTSEQYPRESFANVSADKCWEMVVQRINQEIDRKMGQCKRLHPLQPLQRINGLQMFGFLSPHIRQAIEALDPDHRCLEYWNNWQCNGDIKVNFPSSHSSEISRTNAFDILKGSLSLDEEFQSVLRRLVNNASRRDLSIMHSFFSHEHRVEEWRLALTSVIEEKLKDLDR 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11713484 11720264 - Bpe008903.2 Bpe02g01049 99198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01049 1021 Pfam F/Y rich C-terminus 848 931 IPR003889 GO:0005634
Bpe02g01049 1021 Gene3D - 794 929 - -
Bpe02g01049 1021 Gene3D Cupin 41 415 - -
Bpe02g01049 1021 SMART fyrc_3 850 942 IPR003889 GO:0005634
Bpe02g01049 1021 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Bpe02g01049 1021 ProSiteProfiles FYR domain FYRN motif profile. 786 844 IPR003888 GO:0005634
Bpe02g01049 1021 PANTHER LYSINE-SPECIFIC DEMETHYLASE 11 1018 - -
Bpe02g01049 1021 SMART fyrn_3 800 844 IPR003888 GO:0005634
Bpe02g01049 1021 Pfam F/Y-rich N-terminus 796 841 IPR003888 GO:0005634
Bpe02g01049 1021 MobiDBLite consensus disorder prediction 123 161 - -
Bpe02g01049 1021 MobiDBLite consensus disorder prediction 128 147 - -
Bpe02g01049 1021 SMART cupin_9 265 431 IPR003347 -
Bpe02g01049 1021 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Bpe02g01049 1021 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 11 1018 - -
Bpe02g01049 1021 SUPERFAMILY Clavaminate synthase-like 264 454 - -
Bpe02g01049 1021 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Bpe02g01049 1021 Coils Coil 1016 1021 - -
Bpe02g01049 1021 Pfam jmjN domain 57 90 IPR003349 -
Bpe02g01049 1021 ProSiteProfiles FYR domain FYRC motif profile. 846 936 IPR003889 GO:0005634
Bpe02g01049 1021 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Bpe02g01049 1021 SMART JmjN_1 55 96 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01049 - - - zju:107433853 1131.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01049 Bpe-Chr2:11713484 Bpe08g00806 Bpe-Chr8:10063978 7.80E-56 dispersed
Bpe06g00417 Bpe-Chr6:15565904 Bpe02g01049 Bpe-Chr2:11713484 1.64E-140 transposed
Bpe09g00662 Bpe-Chr9:15252648 Bpe02g01049 Bpe-Chr2:11713484 1.62E-32 transposed
Bpe11g00675 Bpe-Chr11:5191331 Bpe02g01049 Bpe-Chr2:11713484 2.80E-103 transposed
Bpe11g01034 Bpe-Chr11:7672353 Bpe02g01049 Bpe-Chr2:11713484 1.11E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g644 . . . . . . . Bma01g01602 Cmo13g00490 . . . . . . Cpe09g00704 . . . . . . . . . . . . . . . . . . . . . Chy12g00459 . . . Bda01g00098 . Bpe02g01049 . . . . . . Cma13g00454 . Car13g00351 . . Cpe20g00587 Bhi08g00940 Tan05g2762 . . . . . . . . . . . . Lsi02g01004 Csa01g02670 . Cme12g01007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe09g00662 . 1 1230 JUMONJI Transcription Factor Family AT1G08620 53.3 0.0e+00 1218.8
Bpe02g01049 . 34 951 JUMONJI Transcription Factor Family AT1G30810 50.4 2.3e-241 832.0
Bpe09g00662 . 123 701 JUMONJI Transcription Factor Family AT1G30810 56.8 6.9e-185 644.4
Bpe09g00662 . 124 667 JUMONJI Transcription Factor Family AT2G34880 54.4 3.3e-171 599.0
Bpe11g01034 . 49 387 JUMONJI Transcription Factor Family AT2G34880 64.0 1.2e-125 447.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20933 PF02373 JmjC 1.60E-44 CL0029 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01049 Bpe_Chr02 FPKM 0.53136 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.126438