Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01071 ATGGCGCATTTAGATCAAAATCAGTCGACTATGGTGGATTCGCAGCAGAGAAAATTGCGTAGAGGAAAGATCGAGATTAAGCGAATTGAAAATACTACAAATCGTCAAGTAACTTTCTGCAAGCGTCGAAATGGGTTGCTGAAGAAAGCGTACGAGCTTTCTGTTCTTTGTGATGCGGAGGTTGCTCTAATCGTCTTCTCTAGCAGAGGCAAACTCTATGAATATGCCAACAACAGTGTCCAAGGAACAGTGAATAGGTATAAAAAGACTTGCATGGATTCCTCAAGTAACAGAACCACGACAGAAGCCAATATCCAGTCTTACCAACAAGAGTCGGCGAAACTTCGCGTGCAGATCGGAAATTTGCAGAATTCAAACAGACAAATGCTGGGTGATCAGTCAGTGAGTGGTTTGAAAGATAAGGATCTGAAGAACATGGAAAAGGACTTGGAGAAAGGAATAGGCAAAATCAGATCGAGAAAGAATGAGCTTTTATTTGCAGAAATTGAGTACATGAGGAAAAAGGAAATCGAACTTCACAACAATAACCAGCTCCTCCAAGCCAAGATTGCGGAGGGTGGAAGAAGCCAAGAAGTGAACTTAATGGCAGAAGGAGTGAACTATGACCATTATGATTCGAGAAACTACTTTCAAATGAATGCATTGCATAATTCCACTCATCACTACCCGCACCAACACAACACTGCCCCTCAATTGCTCTAA 723 41.91 MAHLDQNQSTMVDSQQRKLRRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEYANNSVQGTVNRYKKTCMDSSSNRTTTEANIQSYQQESAKLRVQIGNLQNSNRQMLGDQSVSGLKDKDLKNMEKDLEKGIGKIRSRKNELLFAEIEYMRKKEIELHNNNQLLQAKIAEGGRSQEVNLMAEGVNYDHYDSRNYFQMNALHNSTHHYPHQHNTAPQLL 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13324724 13328177 - Bpe008927.1 Bpe02g01071 99220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01071 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Bpe02g01071 240 Gene3D - 31 115 IPR036879 GO:0003677|GO:0046983
Bpe02g01071 240 Coils Coil 12 32 - -
Bpe02g01071 240 Pfam K-box region 102 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g01071 240 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Bpe02g01071 240 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 20 225 - -
Bpe02g01071 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 225 - -
Bpe02g01071 240 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Bpe02g01071 240 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Bpe02g01071 240 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Bpe02g01071 240 ProSiteProfiles K-box domain profile. 105 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g01071 240 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Bpe02g01071 240 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Bpe02g01071 240 CDD MADS_MEF2_like 20 96 IPR033896 GO:0000977|GO:0045944
Bpe02g01071 240 SUPERFAMILY SRF-like 21 93 IPR036879 GO:0003677|GO:0046983
Bpe02g01071 240 Coils Coil 105 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00794 Bpe-Chr1:8638153 Bpe02g01071 Bpe-Chr2:13324724 8.06E-100 dispersed
Bpe01g00795 Bpe-Chr1:8708264 Bpe02g01071 Bpe-Chr2:13324724 2.38E-98 dispersed
Bpe02g01071 Bpe-Chr2:13324724 Bpe07g00511 Bpe-Chr7:10389657 5.44E-58 dispersed
Bpe03g00524 Bpe-Chr3:25272818 Bpe02g01071 Bpe-Chr2:13324724 1.76E-36 dispersed
Bpe02g01071 Bpe-Chr2:13324724 Bpe14g00611 Bpe-Chr14:5079086 2.53E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20936 PF01486 K-box 3.70E-22 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01071 K09264 - rcu:8267200 319.316