Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01093 ATGGATGAGGACGGAACCAGTCAAGATCATAAGCAAGGAATTAAGCTCTTTGGAAAGAGAATTACGTTTGATGATAAGCATGTAAAGGATGAAGACAAAGTTGAAGATGAACCGAGAGTTGAAAAGAGGCTAGAAAAGATCATCCCTTGCCCTAGATGCAAGAGCATGGAGACCAAGTTCTGTTACTTCAACAACTACAATGTAAACCAACCTAGACATTTCTGCAAGGGTTGCGAGAGGTACTGGACGGCAGGAGGAGCCCTCCGCAACGTTCCCGTCGGTGCTGGGCGCCGGAAAACCAAGCCTTTCTGTCGAAATAGCATTATTGGGATGCCAGAAAGTTGCGTTTATGACCCATCTCCGGCGGCACTGCACCAGTTTCAGATAGATGGGATAATGGAGGACTGGAAAGTTATGGGTGGCCAGGGTAGTTTCCAGCAAGCGTTTCCGGTGAAGAGGCGGAGGGACGGCCATAGAGGTCAAACGTGTTGA 492 48.37 MDEDGTSQDHKQGIKLFGKRITFDDKHVKDEDKVEDEPRVEKRLEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCERYWTAGGALRNVPVGAGRRKTKPFCRNSIIGMPESCVYDPSPAALHQFQIDGIMEDWKVMGGQGSFQQAFPVKRRRDGHRGQTC 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14443952 14444443 + Bpe008950.1 Bpe02g01093 99242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01093 163 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Bpe02g01093 163 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677|GO:0006355
Bpe02g01093 163 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 9 155 - -
Bpe02g01093 163 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Bpe02g01093 163 PANTHER CYCLIC DOF FACTOR 2 9 155 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01093 - - - zju:107410557 215.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01093 Bpe-Chr2:14443952 Bpe08g00766 Bpe-Chr8:9450191 4.94E-52 dispersed
Bpe11g01139 Bpe-Chr11:8475428 Bpe02g01093 Bpe-Chr2:14443952 1.45E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g01139 . 145 297 C2C2-Dof Transcription Factor Family AT1G29160 56.9 7.2e-47 183.7
Bpe02g01093 . 12 163 C2C2-Dof Transcription Factor Family AT1G29160 52.0 2.9e-40 161.8
Bpe08g00765 . 8 139 C2C2-Dof Transcription Factor Family AT1G29160 53.9 1.6e-38 156.0
Bpe08g00766 CCT 7 139 C2C2-Dof Transcription Factor Family AT1G29160 51.8 3.0e-37 151.8
Bpe11g01139 . 145 297 C2C2-Dof Transcription Factor Family AT2G34140 53.5 8.5e-45 176.8
Bpe02g01093 . 12 163 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.8e-39 159.1
Bpe08g00765 . 8 103 C2C2-Dof Transcription Factor Family AT2G34140 66.7 3.8e-37 151.4
Bpe04g01330 BCT,CCT,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.0 2.0e-42 169.9
Bpe02g00845 CCT,ECH 1 131 C2C2-Dof Transcription Factor Family AT2G37590 61.7 1.4e-38 157.1
Bpe08g01366 . 1 119 C2C2-Dof Transcription Factor Family AT2G37590 54.2 1.3e-36 150.6
Bpe12g00543 . 97 408 C2C2-Dof Transcription Factor Family AT3G47500 51.1 1.8e-73 273.5
Bpe02g00845 CCT,ECH 1 131 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.8e-38 156.4
Bpe15g01111 . 1 118 C2C2-Dof Transcription Factor Family AT5G02460 54.4 1.2e-36 151.0
Bpe02g00845 CCT,ECH 54 140 C2C2-Dof Transcription Factor Family AT3G55370 79.3 1.7e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008695 0 1 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20940 PF02701 zf-Dof 1.30E-31 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01093 Bpe_Chr02 FPKM 1.593735 1.543795 1.400645 1.196358 4.881891 3.953306 5.446021 0.537113 0.658945 0.670169