Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01100 ATGAACGATCTAGGGATTTTACAAATCCAAACTTACCTTCTGAACAAAGAGGCAGATCCTCCCAGCCTGGGTATGGTGATGCAGGAGGAATGTATGGCGTTCAATCACCAGATGGCCAATGCTGCTGCAGTTGCAGCTGCCTTTGGAGGAGTTTTGCCTCCTGGTGTAAGCGGGACAAATGACAGGTGTACGATTCTTATTTCAAACTTCGATCCTGATAGAATAGATGAGGATAAGCTCTTCAACTTATTCTCCATATATGGCAACATTGTAAGAATTAAACTCCTCCGAAATAAACCAGATCACGCACTGGTTCAGATGGGAGACGGGTTCCAGGCTGAATTAGCAGTTCACTTCCTAAAGGGGGCCTTGTTGTTCGGAAAACTGTTGGAAGTGAACTTCTCAAAGTATCCAAATATTACTCAAGGAGCTGATACTCATGAGTATGTAAATTCAAATCTAAACCGCTTCAATCGAAATGCTGCAAAAAACTACAGGTACTGCTGTTCCCCAACAAAGATGATCCATATTTCCTCCCTCCCCCAAGAGGTCACTGAGGAGGAGATTGTGAACCTCCTTGAGGAGCATGGCAGCATTGTCAACACCAAGCTATTTGAGATGAATGGAAAGAATCAGGCCTTGGTTATGTTTGAAACTGAAGAGCAGGCCACTGAAGCCCTTGTCTGCAAGCACGCCACCTCAGTTGGCGGCTCTATTATGCGGATTTCCTTTTCCCAATTGCAGGTAATCTAA 753 44.62 MNDLGILQIQTYLLNKEADPPSLGMVMQEECMAFNHQMANAAAVAAAFGGVLPPGVSGTNDRCTILISNFDPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKLLEVNFSKYPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHISSLPQEVTEEEIVNLLEEHGSIVNTKLFEMNGKNQALVMFETEEQATEALVCKHATSVGGSIMRISFSQLQVI 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14618916 14620637 + Bpe008958.1 Bpe02g01100 99249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01100 250 Gene3D - 60 156 IPR012677 -
Bpe02g01100 250 SUPERFAMILY RNA-binding domain, RBD 61 244 IPR035979 GO:0003676
Bpe02g01100 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 148 - -
Bpe02g01100 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 238 IPR000504 GO:0003723
Bpe02g01100 250 CDD RRM4_PTBPH3 166 244 - -
Bpe02g01100 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 247 IPR000504 GO:0003723
Bpe02g01100 250 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 32 249 - -
Bpe02g01100 250 SMART rrm1_1 64 133 IPR000504 GO:0003723
Bpe02g01100 250 SMART rrm1_1 174 243 IPR000504 GO:0003723
Bpe02g01100 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 137 IPR000504 GO:0003723
Bpe02g01100 250 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 32 249 - -
Bpe02g01100 250 Gene3D - 157 249 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01100 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - zju:107409221 374.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01100 Bpe-Chr2:14618916 Bpe03g00241 Bpe-Chr3:3190017 1.68E-08 dispersed
Bpe02g01100 Bpe-Chr2:14618916 Bpe14g00171 Bpe-Chr14:2097738 8.61E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01100 Bpe_Chr02 FPKM 9.340609 9.16596 11.311236 12.419952 6.882274 5.79676 5.383824 18.872942 18.915121 17.542637