Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01102 ATGGCTATGCGCGTGTACCAAGTCTGGAAGGGAAGTAATAAATTTATCCTTGGTGGGAGACTGATATTTGGGCCTGATACAAGGTCATTGTTTGTCACGTTGTTTCTGATCATTGTTCCAGTTATTATATTTTGTGTATTTGTTGCAAGGCATCTCCGACACAAATTTGAATCACAGAATGCAGGTTACGCAATTCTTGGGGTTGCAATTGTGTTTACTATTTATGTGCTGGTGCTTCTTTCTCTTACATCAGCACGGGACCCAGGAATTATTCCACCAAATTCACATCCACCAGAGGAAGAATTTCGTTATAACTCTTCTGCTTCGACCGATATTGGAGGAAGACAGACAACAAGCCTTCAATTTCCTCGCACAAAGGAAGTGACAGTTAATGGCCTTCCTGTCAGAGTAAAGTATTGCGATACATGCATGCTATATCGTCCTCCTCGCTGTTCTCACTGCTCCATTTGCAACAATTGTGTGGAGCGTTTTGATCACCACTGCCCTTGGGTGGGTCAATGCATTGGACTGCGGAATTATCGATTCTTCTTTATGTTTGTTTCTTCTTCCACCCTTCTCTGCATCTACGTTTTTGCATTGTCCGCCTATTACATCAAGGTGTTGATGGTTGATAATAAGAGCACGGTTTGGAAGGCAATGAAAGAATCTCTTGCATCTGTGATATTGATGGCGTACTGTTTTATCTCTCTATGGTTTGTGGGTGGGCTCACCGGCTTCCATTTGTACCTAATCGGAAAAAACCAGACTACCTATGAAAATTTCCGTTACAAAGGAGACAACAGGATCAATGTATACAATCTGGGTTGTGTGAGCAATTTCTTGGAGGTGTTCTGCACAAAGATAGAGCCATCGAAGAACAATTTCCGAGCTTTTGCTCAAGACGAAGTACAAAGACCTACTGGTCCTCCTGTGGCAAGTAATGTGGGACATGAATCCGATGATTTGGGTGGCGATCAGAGGTCGAAAGTGGCAGATGATCTTGAGATTGGCGAAGACTTGTTGAAGATCTCACAGAGAAGAAATATCGAAGAACTCGATGGGGACATACGAAGTAGAGGAAGCAATGGCCCTCCCCTTAATGCCTCAGAGGCAGACTCCGTTCTTGGCTCTGATCATCGGGCCCCCACCATTCGATCCGACACAAGACATTCAAGTTTGGGAAGGAGAAGCGGGAGCTGGGAAATCGCTCAGGAGGTTCTGGCAAACTCAAATGTCACCGAAAGCAGAAGCTACGCATTGGCAAGGCAATGA 1272 44.58 MAMRVYQVWKGSNKFILGGRLIFGPDTRSLFVTLFLIIVPVIIFCVFVARHLRHKFESQNAGYAILGVAIVFTIYVLVLLSLTSARDPGIIPPNSHPPEEEFRYNSSASTDIGGRQTTSLQFPRTKEVTVNGLPVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVSSSTLLCIYVFALSAYYIKVLMVDNKSTVWKAMKESLASVILMAYCFISLWFVGGLTGFHLYLIGKNQTTYENFRYKGDNRINVYNLGCVSNFLEVFCTKIEPSKNNFRAFAQDEVQRPTGPPVASNVGHESDDLGGDQRSKVADDLEIGEDLLKISQRRNIEELDGDIRSRGSNGPPLNASEADSVLGSDHRAPTIRSDTRHSSLGRRSGSWEIAQEVLANSNVTESRSYALARQ 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14632657 14636147 - Bpe008960.1 Bpe02g01102 99251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01102 423 PANTHER S-ACYLTRANSFERASE 5 423 - -
Bpe02g01102 423 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 5 423 - -
Bpe02g01102 423 MobiDBLite consensus disorder prediction 353 399 - -
Bpe02g01102 423 MobiDBLite consensus disorder prediction 304 329 - -
Bpe02g01102 423 Pfam DHHC palmitoyltransferase 138 263 IPR001594 GO:0016409
Bpe02g01102 423 ProSiteProfiles DHHC domain profile. 138 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01102 K16675 ZDHHC14_18; palmitoyltransferase ZDHHC14/18 [EC:2.3.1.225] - rcu:8283181 711.064
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01102 Bpe14g00435 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01102 Bpe-Chr2:14632657 Bpe04g01347 Bpe-Chr4:20020622 2.68E-112 dispersed
Bpe11g00118 Bpe-Chr11:848243 Bpe02g01102 Bpe-Chr2:14632657 1.70E-11 transposed
Bpe11g01478 Bpe-Chr11:10993917 Bpe02g01102 Bpe-Chr2:14632657 5.25E-126 transposed
Bpe13g00836 Bpe-Chr13:14611068 Bpe02g01102 Bpe-Chr2:14632657 2.66E-131 transposed
Bpe14g00435 Bpe-Chr14:4008375 Bpe02g01102 Bpe-Chr2:14632657 0 wgd
Bpe02g00060 Bpe-Chr2:464126 Bpe02g01102 Bpe-Chr2:14632657 1.38E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1350 . . . . . . . . . Cmo15g00592 . . . . . . Cpe13g00691 Bhi04g02172 . . . . . . Cla08g00276 Cam08g0717 Cec08g0271 Cco08g0364 Clacu08g0427 . Cre08g0252 Cone4ag1482 Cone7ag1462 . . . . . Cme03g00914 Blo17g00138 Blo18g00149 . Bda13g01422 Bpe02g01102 Bpe14g00435 Bma01g01434 Bma02g00157 . . . . . . Car15g00544 . . . . . . . . . . . . . . . . Lsi08g00248 . Chy03g00271 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002682 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 3 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01102 Bpe_Chr02 FPKM 25.495888 30.401455 0.0 0.0 0.0 0.0 0.0 0.0 0.112456 0.0