Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01103 ATGCTCAGTTTCGATTCTAGAGGTCTTGATAATGAAGGACTGCCAGATTACTGCGACATTAAACAAAATGAATTCTTGTATCGGAGACACAAGAAGCAGAAGGAGGAGGACGTCGTTATATGTGAATGCAAATATGATATCAGTGATCCTGATGGTGCATGCGGAGAAAGATGCTTGAATTTCCTTACCAGCACTGAGTGTACGCCTGGCTATTGTCCTTGTGGTATTTATTGCAAGAATCAGAGATTTCAGAAATGCGAATATGCGAAAACTAGGTTGTTCAAAACAGAGGGCCGTGGATGGGGTCTTATAGCAGACGAAAACATAATGGCTGGCCAATTTATAATTGAATATTGTGGGGAAGTCATATCATGGAAGGAAGCCAAAAGAAGATCACAAGCTTATGAAAATCAAGGCCTAAAGGATGCTTTCATTATTTCTCTCAATGCATATGAGTCTATTGATGCCACCAAAAAAGGAAGCTTTGCTAGGTTTATAAACCATTCATGTAACCCGAATTGTGAGACTAGGAAATGGAATGTATTAGGTGAAATAAGGGTTGGCATATTTGCAAAGGAAGACATATCTATGGGAACGGAATTGGCATATGACTATAATTTTGAGTGGTACGGTGGTACTAAGGTCCGCTGCCTATGTGGTGCAACTAGTTGTTCAGGATTCCTTGGAGCAAAGTCTCGTGGCTTTCAGGAGGATACTTATGTGTGGGAAGATGATGATCAAAGGTACTCGGTTGAAAAAATTCCACTCTATGATTCTGCTGAGGATGAGCCGAAGCTCCTTGTGAATTGCATGGATTTTGAGTATAATGCTTATATGAATAACGAGAACCCCTTGATGGTAGATGATAGTATGGGAACCGATCAGCAGTCCCATTCCACTATGGCTATTTGCCCATTTGGTTCTGCTTTGGAGGGTATAGGTACGAATGAAGTAAAAACTGAGGTAAACGAGGAGATGAAGCCGCACTCACAAGATACTCAACAGGCTTATCCACAGCAGAATGCAATGATCTCCCGAATACGAAGTAATACTGCATGCCGGAACTATCAGATTGGACCAAGGTCAGTTCCCAAAAAAAGGTCCAAGCAGTTGTCTAATGGTAGATTGAAACAGTTGATACAAAAGCCGGTGGACGCCAAAGCGGCTGCTCTGCTATTAGGATCAAAGGCAGCGCAAGAAGAAATTTTAACTTACGAGGAAGTGAAAAATGAGGCCACCTCTGAACTCGATGCGTTGTACGATGAAATACGACCTGCCATTGAGGAATATGAAAGGGATAGCCAAGACAGTGTGGCAACTAGTGTTGCAGAGAAGTGGATTCAAGCAAGCTGTTCAAAACTAAAGGCAGAATTTGATCTTTATGCAACAATTATTCGGAACATTGCCTGTACCCCACCAGCTTCCAGGACCAGTGGCTCTGCCAATGCCATTGAGGGAGGTAATAACAATGGAGTCAACTTCTTGGCAAACTGA 1494 42.3 MLSFDSRGLDNEGLPDYCDIKQNEFLYRRHKKQKEEDVVICECKYDISDPDGACGERCLNFLTSTECTPGYCPCGIYCKNQRFQKCEYAKTRLFKTEGRGWGLIADENIMAGQFIIEYCGEVISWKEAKRRSQAYENQGLKDAFIISLNAYESIDATKKGSFARFINHSCNPNCETRKWNVLGEIRVGIFAKEDISMGTELAYDYNFEWYGGTKVRCLCGATSCSGFLGAKSRGFQEDTYVWEDDDQRYSVEKIPLYDSAEDEPKLLVNCMDFEYNAYMNNENPLMVDDSMGTDQQSHSTMAICPFGSALEGIGTNEVKTEVNEEMKPHSQDTQQAYPQQNAMISRIRSNTACRNYQIGPRSVPKKRSKQLSNGRLKQLIQKPVDAKAAALLLGSKAAQEEILTYEEVKNEATSELDALYDEIRPAIEEYERDSQDSVATSVAEKWIQASCSKLKAEFDLYATIIRNIACTPPASRTSGSANAIEGGNNNGVNFLAN 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14638943 14644350 + Bpe008961.2 Bpe02g01103 99252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01103 497 SMART set_7 89 212 IPR001214 GO:0005515
Bpe02g01103 497 ProSiteProfiles AWS domain profile. 36 87 IPR006560 GO:0005634|GO:0018024
Bpe02g01103 497 Pfam AWS domain 49 86 IPR006560 GO:0005634|GO:0018024
Bpe02g01103 497 SUPERFAMILY SET domain 9 226 IPR046341 -
Bpe02g01103 497 ProSiteProfiles Post-SET domain profile. 213 229 IPR003616 -
Bpe02g01103 497 Gene3D SET domain 4 245 IPR046341 -
Bpe02g01103 497 PANTHER SET DOMAIN PROTEINS 10 434 - -
Bpe02g01103 497 ProSiteProfiles SET domain profile. 89 206 IPR001214 GO:0005515
Bpe02g01103 497 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 10 434 - -
Bpe02g01103 497 SMART PostSET_3 213 229 IPR003616 -
Bpe02g01103 497 SMART shorttest3 36 88 IPR006560 GO:0005634|GO:0018024
Bpe02g01103 497 Pfam SET domain 100 206 IPR001214 GO:0005515
Bpe02g01103 497 Coils Coil 395 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01103 - - - csv:101222397 706.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00629 Bpe-Chr2:4085197 Bpe02g01103 Bpe-Chr2:14638943 6.43E-54 dispersed
Bpe02g01103 Bpe-Chr2:14638943 Bpe15g00066 Bpe-Chr15:7813559 5.15E-29 dispersed
Bpe05g01032 Bpe-Chr5:22904842 Bpe02g01103 Bpe-Chr2:14638943 2.18E-16 dispersed
Bpe02g01103 Bpe-Chr2:14638943 Bpe05g00555 Bpe-Chr5:19692303 2.55E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1347 . . Bda01g00865 . . . . . . . . . . . . . Cpe13g00692 Bhi04g02533 . . . . . . . . . . . . . . . . . . . . . . Blo18g00148 . . Bpe02g01103 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00567 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20943 PF00856 SET 1.10E-19 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01103 Bpe_Chr02 FPKM 1.21165 1.574479 2.704211 2.565447 2.959087 2.986408 4.025989 3.687313 3.854041 4.505725