Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01113 ATGGATATGGACACTAATTTCACTGCCGGCAAGCCGCCTGCGACAGCCAGTGTCATGGACTTGAAGCAGATGCCGGACACCCCGCATCGTGAATCTCACCACCGACGGGCACTGTCCGACACCTCTTTCCGATTACCGAATCTGGATGATCTTCTTATCTTTGATCCCTCCGATCTTGACCTTTCTTATCTTCCATCGCCTTCGCCGTCTCCTTCATCTGGCGCTTCCATCTCTAAGTTCGATGATTCCAGCGGCCCCAAGCTCTTGCCCCCTGTCTCCGGCGCCGTTGGTGATCACTTTAGAAGCTTGTCAATGGACTCCGATTTCTTCGATTCCCTAGGAATTTCTGGCGATGGCGATAGGTTTGGCGGGAAATTGGTAGTGGGGGAGAAGAGGGTAATTCGTCACCGGCACAGCAATTCGATGGATGGGTCATCGTCATCGGCGTTTGAGGCTGATTTCACGATGGTTGACGGCGTGAAGAAGGCGATGGGGGCAGACAAACTCGCTGAGCTTGCCCTAATTGACCCCAAAAGAGCTAAGAGGATTCTTGCAAATCGACAATCTGCTGCCCGATCGAAGGAAAGAAAAGTTCGTTACACCAGCGAGTTGGAGAGGAAGGTTCAAACACTGCAGTCAGAAGCAACAACTCTTTCTGCGCAAGTCACAATTTTGCAGAGAGATACCACCGGGTTGTCTACCGAGAATAAGGAACTGAAACTGAGATTACAAGCTTTGGAGCAGCAAGCCCAACTAAGGGACGCTTTGAACGAAGCGATGAAAGAAGAAGTGCAACGGCTTAAGATAGCTGCAGGGCAAATGCATGCTGGAAATGGCAACTCATATAACCGAGGACTGGCTTCGCAATTCCCATCTCTGCCGCCATCTCGGCATCAATTTGGCGCCTCAAAGCCTCAGATTAACATGCCTCACACCTCGGCAAACCAACAACATCGCGATCTTGGCCTCAATGGCTACCAGTCTCATCCGGCGTTCATGGACTTCAATCCTAATGCTGGCTGA 1023 51.12 MDMDTNFTAGKPPATASVMDLKQMPDTPHRESHHRRALSDTSFRLPNLDDLLIFDPSDLDLSYLPSPSPSPSSGASISKFDDSSGPKLLPPVSGAVGDHFRSLSMDSDFFDSLGISGDGDRFGGKLVVGEKRVIRHRHSNSMDGSSSSAFEADFTMVDGVKKAMGADKLAELALIDPKRAKRILANRQSAARSKERKVRYTSELERKVQTLQSEATTLSAQVTILQRDTTGLSTENKELKLRLQALEQQAQLRDALNEAMKEEVQRLKIAAGQMHAGNGNSYNRGLASQFPSLPPSRHQFGASKPQINMPHTSANQQHRDLGLNGYQSHPAFMDFNPNAG 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14778556 14780095 + Bpe008971.1 Bpe02g01113 99262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01113 340 MobiDBLite consensus disorder prediction 1 40 - -
Bpe02g01113 340 MobiDBLite consensus disorder prediction 64 80 - -
Bpe02g01113 340 MobiDBLite consensus disorder prediction 24 40 - -
Bpe02g01113 340 SMART brlzneu 174 238 IPR004827 GO:0003700|GO:0006355
Bpe02g01113 340 Coils Coil 229 266 - -
Bpe02g01113 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 239 IPR004827 GO:0003700|GO:0006355
Bpe02g01113 340 CDD bZIP_plant_RF2 179 228 IPR044759 GO:0003700|GO:0006355
Bpe02g01113 340 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 12 334 - -
Bpe02g01113 340 Gene3D - 177 230 - -
Bpe02g01113 340 Coils Coil 201 221 - -
Bpe02g01113 340 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 12 334 - -
Bpe02g01113 340 MobiDBLite consensus disorder prediction 64 84 - -
Bpe02g01113 340 SUPERFAMILY Leucine zipper domain 178 230 IPR046347 GO:0003700|GO:0006355
Bpe02g01113 340 Pfam bZIP transcription factor 178 235 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01113 K20557 VIP1; transcription factor VIP1 - jre:109011427 347.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00611 Bpe02g01113 CCT
Bpe02g01113 Bpe14g00332 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01113 Bpe-Chr2:14778556 Bpe14g01060 Bpe-Chr14:7929959 6.40E-55 dispersed
Bpe15g00728 Bpe-Chr15:17799736 Bpe02g01113 Bpe-Chr2:14778556 5.32E-21 dispersed
Bpe02g01113 Bpe-Chr2:14778556 Bpe13g00723 Bpe-Chr13:13803757 6.27E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1228 Blo01g01330 . . . Bpe02g00611 . . Bma01g02114 Cmo04g02544 . . Cma09g01093 . . . Cpe06g00893 Cpe13g00667 Bhi04g01808 Tan11g1179 . . . . Lcy10g1323 Cla08g00667 Cam08g1098 Cec08g0683 Cco08g0792 Clacu08g0804 . Cre08g0608 Cone4ag1515 . Cone17ag0796 Cone20ag0394 . . . Cme03g00392 Blo17g00220 . . Bda13g01529 Bpe02g01113 Bpe14g00332 . Bma02g00278 . . Cmo09g01102 . . Car04g02342 Car09g00991 Cpe01g02103 . Bhi09g01506 . . . . . . . . . . . . . Lsi08g00528 . Chy03g00592 Cme01g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001960 2 2 1 0 1 2 3 2 2 2 2 2 3 2 2 4 2 3 3 2 3 2 1 2 2 2 2 5 4 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20944 PF00170 bZIP_1 5.00E-08 CL0018 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01113 Bpe_Chr02 FPKM 17.532339 19.967869 15.494215 21.232191 17.816092 17.879358 18.273357 21.956188 18.747293 21.736176