Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01116 ATGACAAGCCAGAGGGTGGTGATTTCCGAGGCGAAATCTAGTATCGGAATGGTTTTGACGGCGGCGATGTCTAAGTCGGCGCTGATGCCGCCTACGGTGAGAGAGCCAATGGCTAGGATCGGAGAGTTGGTGGCTATGTCTCAAAAGAAGCTCATGAAGAGACTGGAAAATGGGGCTAAGGTGAATGCTTGGGTGGAGGCAATGAGAGATTCATCTCCACCAAAACTCAGACCCATTTCCTCTTTCTCTGACACAGCAGATCAAAGCTCTTGGACACTTCTTCATCCATCAGCTCTGAACATGTTCGATGAAATAACAAAAGCTTCAAAAGGAAAGCAAATAGTCATGTTTTTGGATTATGATGGGACACTCTCCCCCATCGTTGAAGACCCAGATAGAGCTTTCATGACCCACGAGATGAGAGAAGCTGTGAAGAATGTTGCTAGATACTTCCCTACAGCCATCGTCAGCGGCAGAAGCAGAGAAAAGCTTTACAACTTCGTACAGTTAGCAGAGCTTTACTACGCCGGAAGTCATGGAATGGACGTAAAGGGACCAACCAAAGAGCGTAAATACACGAAGGCAAACCCATCACTCTCTTGCCAACCAGCCACTGAATTCTTACCCATTATTGACGAGGCATACAAGGCTTTGTGTGACAAAACTGCATCAATTCAAGGAGCCAGGGTGGAAAACAACAGATTTTGCTTATCTGTCCATTTCCGCTGTGTCGATGAAAAGAATTGGAGCGCATTAGCGGAGAAAGTTAGGTCGGTGGTCAACGAGTATCCAAAACTTAGGACGACTCAAGGAAGAAAGGTTCTAGAAATTCGGCCGACCATAAAATGGGACAAAGGAAAAGCACTTGAATTGTTGTTAGACTCACTTGGGTTTGCGAATTCGGAAAATGTTTTGCCTGTTTACATTGGAGACGATCAGACCGACGAGGACGCATTCGAGGTTTTGAGAAGTAGAAAACTAGGGTTTGGTATTCTTGTTTCACAAAGTCCAAAGGAAACAAGTGCTTCTCACTCATTGCAAGAACCATCCGAGGCAAGACTTTTACTTGTTTAA 1074 45.25 MTSQRVVISEAKSSIGMVLTAAMSKSALMPPTVREPMARIGELVAMSQKKLMKRLENGAKVNAWVEAMRDSSPPKLRPISSFSDTADQSSWTLLHPSALNMFDEITKASKGKQIVMFLDYDGTLSPIVEDPDRAFMTHEMREAVKNVARYFPTAIVSGRSREKLYNFVQLAELYYAGSHGMDVKGPTKERKYTKANPSLSCQPATEFLPIIDEAYKALCDKTASIQGARVENNRFCLSVHFRCVDEKNWSALAEKVRSVVNEYPKLRTTQGRKVLEIRPTIKWDKGKALELLLDSLGFANSENVLPVYIGDDQTDEDAFEVLRSRKLGFGILVSQSPKETSASHSLQEPSEARLLLV 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14799393 14801739 + Bpe008974.1 Bpe02g01116 99265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01116 357 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 16 354 IPR044651 GO:0004805|GO:0005992
Bpe02g01116 357 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 16 354 - -
Bpe02g01116 357 Pfam Trehalose-phosphatase 117 350 IPR003337 GO:0003824|GO:0005992
Bpe02g01116 357 Gene3D - 116 346 IPR023214 -
Bpe02g01116 357 Gene3D - 204 280 - -
Bpe02g01116 357 SUPERFAMILY HAD-like 115 352 IPR036412 -
Bpe02g01116 357 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 116 323 IPR006379 -
Bpe02g01116 357 CDD HAD_TPP 115 354 - -
Bpe02g01116 357 TIGRFAM T6PP: trehalose-phosphatase 112 351 IPR003337 GO:0003824|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01116 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - pvy:116131529 471.085
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01116 Bpe14g00448 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01116 Bpe-Chr2:14799393 Bpe06g00075 Bpe-Chr6:970001 7.16E-165 dispersed
Bpe14g00448 Bpe-Chr14:4095675 Bpe02g01116 Bpe-Chr2:14799393 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01116 Bpe_Chr02 FPKM 53.383732 57.42696 57.852306 57.409454 56.732468 55.030231 54.084888 113.145912 112.928169 108.726746