Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01150 ATGGCTAGAGAGAAGATCAAGATCAAGAAGATTGATAACTTGACTGCTAGACAAGTCACTTTCTCTAAGAGAAGACGAGGGCTTCTCAAGAAAGCCGAGGAGCTCTCTGTTCTCTGCGATGCTGAAGTTGCTCTCCTCATCTTCTCTGCTACTGGAAAGTTCTTTGAATATTCCAGCTCGAGACAAATGAGAGGTGAAGATCTTGATGGTTTAAAATTGGACGAGTTGATGCAATTAGAAAAATTGCTCAATGCAGGTCTCACCCGTGTTGTCGAGACTAAGGTTCGTAAGTGTGATTTTATGCAAAAAATTGAAGATAACTATGGATTTATATGGACAAGTGGAAACTTTTTGTTGCAGGCTGTCATGCTGTCTAAAGAGAAAAGACCGGAATCGGAAGTTGCTACCCAAGAAGGTGTGTCGTCCGATGTGTTGGCCACCAACGTTTGCACCTGTAACAGTGGCCCTCCGATCGAAGACGATAGCTCCGATACTTCCCTCAAACTAGGGTAA 513 43.47 MAREKIKIKKIDNLTARQVTFSKRRRGLLKKAEELSVLCDAEVALLIFSATGKFFEYSSSRQMRGEDLDGLKLDELMQLEKLLNAGLTRVVETKVRKCDFMQKIEDNYGFIWTSGNFLLQAVMLSKEKRPESEVATQEGVSSDVLATNVCTCNSGPPIEDDSSDTSLKLG 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15107315 15110643 - Bpe009010.1 Bpe02g01150 99299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01150 170 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 61 169 - -
Bpe02g01150 170 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 61 - -
Bpe02g01150 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe02g01150 170 Pfam K-box region 59 97 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g01150 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe02g01150 170 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe02g01150 170 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Bpe02g01150 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe02g01150 170 SUPERFAMILY SRF-like 3 63 IPR036879 GO:0003677|GO:0046983
Bpe02g01150 170 PANTHER SERUM RESPONSE FACTOR HOMOLOG 61 169 - -
Bpe02g01150 170 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 61 - -
Bpe02g01150 170 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Bpe02g01150 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe02g01150 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe02g01150 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01150 - - - ghi:107921301 176.792
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01150 Bpe-Chr2:15107315 Bpe15g00259 Bpe-Chr15:13954296 1.98E-49 dispersed
Bpe02g01150 Bpe-Chr2:15107315 Bpe14g00486 Bpe-Chr14:4328779 7.26E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g509 . . Bda01g00911 . . . . . . Cmo12g00151 . . . Car12g00179 . . Cpe07g00167 . . . . . . . . . . . . . . Cone4ag1298 Cone7ag0856 . . . . . . Blo17g00098 . . . Bpe02g01150 . . Bma02g00112 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000411 4 12 1 3 3 2 4 1 1 3 2 1 4 3 3 6 1 8 5 2 3 4 3 3 2 3 3 11 13 4 118
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20948 PF01486 K-box 2.60E-07 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01150 Bpe_Chr02 FPKM 17.590313 18.893368 21.579235 21.890396 15.995554 14.699841 14.905997 23.921738 24.779028 22.917114