Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01160 ATGGCTTCTATATCAGGCATTTGCTCGTCCTCCTCGACATTCAAACCCAAGACTCTTCTCTCAAGAGCAACAAATTCTTTCCGCAGACAGTCGGTTGCATTTCCGACGCGTTCCAAGCTGACGGAGCAGAAATCGGGCGCACTTCAGGCTCGTGCCGTGGCTAAGGAGATTTCGGCGGAATTATCTGGCACCGATGGAGGTTTTAGAAAGGAGAAAAAGGCGTTGGAGAAAGATCCTCGTGCGTTGTGGCAGAGATACGTTGACTGGTTGTACCAACATAAAGAGCTTGGATTGTTTCTGGACGTGAGTCGGATCGGATTCACAGACGAGTTCGTGGAGGAGATGGAGCCCAGGTTCCAGGCTGCCTTACGGGATATGGAAAAACTTGAGAAGGGCGCTATTGCAAATCCCGATGAAGGACGCATGGTTGGTCACTACTGGCTGAGGAACTCTAAGCTCGCGCCAAATTCGTTTTTGAGATTGAAGATCGAGAAAACTCTGGACGCTGTCTCCAAGTTTGCGGTCGACGTCGTCAGCGGTAAGATTAAGCCACCAGGTTATCCCCGCTTTACTCAAATACTGTCGGTTGGGATTGGAGGCTCAGCTCTAGGACCTCAGTTCGTTGCCGAGGCATTGGCTCCTGACAATCCTCCTTTGAAGATAAGATTCATTGACAATACAGATCCAGCAGGGATTGATCATCAGATTGCACAACTTGGAGAGGAGCTGGCTTCTACTCTTGTAATAGTGATTTCAAAGAGTGGAGGTACTCCTGAAACTAGAAATGGTTTATTGGAAGTACAGAAGGCCTTTCGTGATGCTGAACTGATATTTGCAAAACAGGGTGTTGCAATAACACAAGAAAATTCGTTGTTGGACAACACTGCAAGAATTGAAGGGTGGTTGGCCAGATTCCCTATGTTTGACTGGGTGGGTGGAAGAACATCCGAAATGTCGGCTGTTGGTTTGCTTCCAGCTGCATTACAGGGAATTGACATTAGAGGAATGCTTTCTGGAGCTGCTTTAATGGACGAGGCAAATAGAACTACGGTGCTTAAGAATAACCCTGCAGCACTGCTAGCTTTATGTTGGTATTGGGCTTCTGATGGTGTGGGATCTAAGGACATGGTGGTTCTTCCGTATAAGGATAGCTTGTTATTATTTAGTCGTTATCTGCAGCAACTGGTCATGGAATCTCTTGGAAAGGAGTTTGACCTTGCTGGCAATCGGGTAAAACAGGGCCTTACAGTGTATGGAAACAAAGGGAGCACAGATCAGCATGCCTATATCCAACAACTTCGAGAAGGCGTCCACAATTTTTTTGTGACGTTCATAGAAGTGCTTCGAGATAGACCCCCTGGTCATGATTGGGAACTTGAGCCAGGTGTTACATGTGGAGACTATCTGTTCGGTATGCTACAGGGAACAAGGTCAGCTCTTTATGCTAATCGCCGCGAATCAATCACAGTCACTGTTCAACAAGTGACACCAAAATCTGTCGGAGCTCTTGTAGCACTTTATGAGCGTGCTGTTGGGATATATGCCTCTCTTGTTAATATTAATGCTTACCATCAGCCTGGTGTCGAAGCTGGAAAAAAAGCGGCCGGGGAAGTATTAGCTCTCCAGAAGCGGGTTTTGCAAGTGCTTAATGAAGCCACGTATGATAAGATGTTTTGCATACTATGGCTTATGATTGATTACGGCTTGTTTCTATATATTAGCTGTAAAGAGCCTGTTGAACCTTTGACACTCGACGAAGTTGCTGATCGCTGCCATGCACCAGAGGATATTGAAATGATCTACAAGATCATTGCACACATGGCGGCAAATGACAGAGCATTGATTGCCGAAGGCAACTGCGGCTCTCCAAGAAGCATTAAAGTTTTCCTTGGAGAGTGTAACCTCGATGAGTTGTATGGTTGA 1923 46.33 MASISGICSSSSTFKPKTLLSRATNSFRRQSVAFPTRSKLTEQKSGALQARAVAKEISAELSGTDGGFRKEKKALEKDPRALWQRYVDWLYQHKELGLFLDVSRIGFTDEFVEEMEPRFQAALRDMEKLEKGAIANPDEGRMVGHYWLRNSKLAPNSFLRLKIEKTLDAVSKFAVDVVSGKIKPPGYPRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGEELASTLVIVISKSGGTPETRNGLLEVQKAFRDAELIFAKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIRGMLSGAALMDEANRTTVLKNNPAALLALCWYWASDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLAGNRVKQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANRRESITVTVQQVTPKSVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLQVLNEATYDKMFCILWLMIDYGLFLYISCKEPVEPLTLDEVADRCHAPEDIEMIYKIIAHMAANDRALIAEGNCGSPRSIKVFLGECNLDELYG 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15224751 15230871 - Bpe009022.1 Bpe02g01160 99309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01160 640 Gene3D - 62 186 - -
Bpe02g01160 640 PRINTS Glucose-6-phosphate isomerase signature 381 402 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 PRINTS Glucose-6-phosphate isomerase signature 193 212 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 PRINTS Glucose-6-phosphate isomerase signature 515 528 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 PRINTS Glucose-6-phosphate isomerase signature 305 323 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 PRINTS Glucose-6-phosphate isomerase signature 501 515 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 PRINTS Glucose-6-phosphate isomerase signature 483 501 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 1 554 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 573 639 - -
Bpe02g01160 640 CDD SIS_PGI_1 164 328 IPR035476 -
Bpe02g01160 640 Gene3D - 327 524 - -
Bpe02g01160 640 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 48 548 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 Pfam Phosphoglucose isomerase 481 540 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 Pfam Phosphoglucose isomerase 126 449 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 573 639 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 SUPERFAMILY SIS domain 72 542 IPR046348 GO:0097367|GO:1901135
Bpe02g01160 640 CDD SIS_PGI_2 374 538 IPR035482 -
Bpe02g01160 640 Gene3D - 187 326 - -
Bpe02g01160 640 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 1 554 - -
Bpe02g01160 640 ProSitePatterns Phosphoglucose isomerase signature 2. 515 532 IPR018189 GO:0004347|GO:0006094|GO:0006096
Bpe02g01160 640 Hamap Glucose-6-phosphate isomerase [pgi]. 95 542 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01160 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - jre:108985058 1045.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01160 Bpe04g00422 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01160 Bpe-Chr2:15224751 Bpe04g00422 Bpe-Chr4:2730405 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g489 . . Bda01g00916 Bda03g00461 . Bpe04g00422 Bma04g00436 . . Cmo12g00145 . . . Car12g00170 . . Cpe07g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01160 . . . . . . Cma12g00187 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009057 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01160 Bpe_Chr02 FPKM 39.858765 41.124958 35.919746 34.354256 14.023417 17.081902 14.227083 43.792885 47.134068 48.816059