Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01163 TTAACAATGGGGAGGGGGAAGATCGTGATACGGAGGATTGATAATTTGACGAATAGGCAGGTGACATTCTCGAAGCGGAGGAACGGATTGCTGAAGAAGGCAAAGGAGCTTGCAATCCTTTGCGATGCCGAGGTAGGCGTCATTATCTTCTCCAGCACAGGCAAGCTCTACGACTACGCCAGCACCAGCATAAAAGCAGTAACCGAAAGATATTACAAGACAAGAGACGACCATCATCAGCATAGAAACCCAACATCTGAAGTTAAGTTCTGGCAAAGGGAAGCAGCCCTGCTTCGGCAGCAACTACATAGCTTGCAAGAAAATCACCGACAGGTTATGGGTGAAGAATTATCAGGCCTGAGCGTTGAAGATCTACAAAGTCTAGAGAACCAACTGGAAAGCAGTCTTAGAGGCGTTCGTATGAAAAAGGTATGA 435 46.67 LTMGRGKIVIRRIDNLTNRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDYASTSIKAVTERYYKTRDDHHQHRNPTSEVKFWQREAALLRQQLHSLQENHRQVMGEELSGLSVEDLQSLENQLESSLRGVRMKKV 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15251324 15267655 + Bpe009025.1 Bpe02g01163 99312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01163 144 Gene3D - 16 96 IPR036879 GO:0003677|GO:0046983
Bpe02g01163 144 Coils Coil 88 115 - -
Bpe02g01163 144 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Bpe02g01163 144 SUPERFAMILY SRF-like 4 93 IPR036879 GO:0003677|GO:0046983
Bpe02g01163 144 Pfam K-box region 85 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g01163 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677|GO:0046983
Bpe02g01163 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 143 - -
Bpe02g01163 144 ProSiteProfiles K-box domain profile. 88 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g01163 144 CDD MADS_MEF2_like 4 80 IPR033896 GO:0000977|GO:0045944
Bpe02g01163 144 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Bpe02g01163 144 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Bpe02g01163 144 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Bpe02g01163 144 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Bpe02g01163 144 ProSitePatterns MADS-box domain signature. 5 59 IPR002100 GO:0003677|GO:0046983
Bpe02g01163 144 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 3 143 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00148 Bpe02g01163 CCT
Bpe02g01163 Bpe14g00493 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01163 Bpe-Chr2:15251324 Bpe14g00611 Bpe-Chr14:5079086 4.65E-49 dispersed
Bpe14g00493 Bpe-Chr14:4388416 Bpe02g01163 Bpe-Chr2:15251324 1.29E-92 wgd
Bpe02g00148 Bpe-Chr2:1012227 Bpe02g01163 Bpe-Chr2:15251324 1.08E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20950 PF01486 K-box 4.80E-19 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01163 K09264 - jre:109004814 233.802