Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01166 TTACTGGAAGAATGTATAAACAGAAATTCGGCTTTCGAAACCGAAGCTATTCATGCTCATATCATTAAAAAAGGAATTCACGAAGAACTATTTCTCATGACGTTCCTCGTGAATGTTTATGCAAAATGCGGTAACATGGAATATGCCCGCAAAGTTTTTGACAATTTGCCGAGGAGAAATGTCGTTGCCTGGACAACCCTAATGACAGGATATGTTCACCAATTGCAGCCACAGATTGCAATTGAAGTTTTCCTCGAAATGTTAGATGCAGGGGCTTATCCAACAAACTACACTCTGGGAATTGTTCTAAACGCATGTACTTCCTCAAAGTCCACTGAATTGGGGAGGCAAATTCATGCCTATATTATTAAATACCAACTTGATTTTGACACTAGTATTGGGAACTCTCTTTCAAGCTTTTACTCTAAAACTCGAAAGTTGAAATCTGCCATAAAATCGTTTAAGAGAATCCATAAAAAGAATGTGATCTCTTGGACTGCAGTTATATCAGCTTGTGGGGAAAACGGGGCTGCCGTGCAAGGTCTGAGTTTTTTTGCAGAAATGCTGGCTCAAGGCATTGAACCTAATGAGTTCACCTTCACTAGTGTCTTGAGCTTGTGCTGTGTAACGCTGACATTGGGTTTAGGAGCTCAAATTCACTCATTAAGCCTCAAACTAGGCTACGAATTGAGCTTGCCTATAAGAAACTCTGTGATGTACTTGTACTTAAAATGTGGATGGATTCATGAGGCTGACAAGGTGTTTGAAGGAATGGAAGTTGTAAATTTAGTCACGTGGAATGCAATGATTGCAGGCTACGCAAAAATGATGGATTCTAACAATCTCTCGGCATACCGAAATGGAAATGAAGCCTTGAATATTTTCTTGAAATTGCATCGATCAAATATAAAGCCCGATTTGTTCACATTTTCTAGTGTTTTAACTGTGTGTAGTAGTTTGGTGGCCCTAGAACAAGGGGAGCAAGTTCATGCTCAAACCATCAAGACTGGATTTCTGTCTGATGTTGTAGTGGGAACCGCACTTGTTAATATGTATAATAAATGTGGAAGCATCGAAAAAGCGTGTAGAGCTTTCGTCGAGATGTCCACTCGAACTTTGATATCTTGGACTTCAATGATAACTGGATTTTCACAGTACAGACGGTCTCGACAAGCCCTTCAGCTTTTCGAAGACATGTTACTTGCAGGGGTTAGGCCAAACCAGGTGACTTTTGTGGGTGTTTTATCAGCTTGTAGCCATGCCGGAATGGTAGAAGAAGCATTTGGGTATCTCAACCTGATGCAAAAGGAGTATAATATTAGACCTGTTATGGACCACTTAGCCTGCATGATCGATATGCTTGTACGATTGGGTCGGCTGGATGAAGCTTTTGATTTCATAAAGAAGATGGATTTTGAGCCTAATGAGTGCATATGGAAGATCTTAGTTGCAGGCTGTAGAATTCAAGGGAATTTAGAACTTGGGTTTTATGCAGCTGAGGAACTACTCAAGCTCAAGCCTAGAGATTCGGAGACTTACATCTCGTTGCTGAACATGTACCTCTCAGCAGAGCGGTATAAGGATGTTTCGAGAGTGAGAAAGCTGATGAAGGAAGAGAAACTTGAGAAATTGAATGATTGGAGCTGGATTAGCATTAAAAACAAGGTTTATTCATTTAAACCCAACGACAAGTCCCATTATAACAGCGAGGAGATGAATGAACTATTAGAGAATTTAATTGAAGAAGTCAAGAATCTTGGGTACGAATCTGTTGAGTGTCTGGAGGTAGAAGAAGAAGAAGAAAAAGCTGAACATGAAGAAAAATTTCTCGAATCCACTGTCCATCACAGCGAAAAGTTAGCCGTTGCTTTTGGGTTGTTGAAACTGCCAAATGCTGCGCAGATTCGGGTTATCAAGAGCACCACCATGTGTGGGGACTGCCATAGCTTTTTAAGGTTTGTTTCTGTATTGACTGCTAGAGAAATCATCATCAGAGATGGTAAGAGGCTTCATCAATTTGTCAATGGACAGTGTTCTTGTGGAGATAGCAATTTTGCTTGA 2061 40.42 LLEECINRNSAFETEAIHAHIIKKGIHEELFLMTFLVNVYAKCGNMEYARKVFDNLPRRNVVAWTTLMTGYVHQLQPQIAIEVFLEMLDAGAYPTNYTLGIVLNACTSSKSTELGRQIHAYIIKYQLDFDTSIGNSLSSFYSKTRKLKSAIKSFKRIHKKNVISWTAVISACGENGAAVQGLSFFAEMLAQGIEPNEFTFTSVLSLCCVTLTLGLGAQIHSLSLKLGYELSLPIRNSVMYLYLKCGWIHEADKVFEGMEVVNLVTWNAMIAGYAKMMDSNNLSAYRNGNEALNIFLKLHRSNIKPDLFTFSSVLTVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIEKACRAFVEMSTRTLISWTSMITGFSQYRRSRQALQLFEDMLLAGVRPNQVTFVGVLSACSHAGMVEEAFGYLNLMQKEYNIRPVMDHLACMIDMLVRLGRLDEAFDFIKKMDFEPNECIWKILVAGCRIQGNLELGFYAAEELLKLKPRDSETYISLLNMYLSAERYKDVSRVRKLMKEEKLEKLNDWSWISIKNKVYSFKPNDKSHYNSEEMNELLENLIEEVKNLGYESVECLEVEEEEEKAEHEEKFLESTVHHSEKLAVAFGLLKLPNAAQIRVIKSTTMCGDCHSFLRFVSVLTAREIIIRDGKRLHQFVNGQCSCGDSNFA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15318259 15320319 + Bpe009027.1 Bpe02g01166 99315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01166 686 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 10 615 - -
Bpe02g01166 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 60 94 IPR002885 -
Bpe02g01166 686 Pfam E motif 491 550 IPR046848 -
Bpe02g01166 686 Gene3D Tetratricopeptide repeat domain 111 211 IPR011990 GO:0005515
Bpe02g01166 686 Gene3D Tetratricopeptide repeat domain 1 110 IPR011990 GO:0005515
Bpe02g01166 686 Gene3D Tetratricopeptide repeat domain 212 281 IPR011990 GO:0005515
Bpe02g01166 686 Gene3D Tetratricopeptide repeat domain 282 436 IPR011990 GO:0005515
Bpe02g01166 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Bpe02g01166 686 Pfam PPR repeat family 374 419 IPR002885 -
Bpe02g01166 686 Pfam PPR repeat family 160 208 IPR002885 -
Bpe02g01166 686 Pfam PPR repeat family 262 317 IPR002885 -
Bpe02g01166 686 Pfam PPR repeat family 59 106 IPR002885 -
Bpe02g01166 686 PANTHER OS01G0913400 PROTEIN-RELATED 10 615 - -
Bpe02g01166 686 Coils Coil 569 613 - -
Bpe02g01166 686 Gene3D Tetratricopeptide repeat domain 437 624 IPR011990 GO:0005515
Bpe02g01166 686 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Bpe02g01166 686 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Bpe02g01166 686 TIGRFAM PPR: pentatricopeptide repeat domain 163 197 IPR002885 -
Bpe02g01166 686 TIGRFAM PPR: pentatricopeptide repeat domain 62 95 IPR002885 -
Bpe02g01166 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Bpe02g01166 686 Pfam PPR repeat 346 369 IPR002885 -
Bpe02g01166 686 Pfam PPR repeat 236 259 IPR002885 -
Bpe02g01166 686 Pfam PPR repeat 449 470 IPR002885 -
Bpe02g01166 686 Pfam DYW family of nucleic acid deaminases 611 683 IPR032867 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01166 - - - zju:107427123 986.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01166 Bpe-Chr2:15318259 Bpe03g00183 Bpe-Chr3:2225900 2.23E-13 dispersed
Bpe02g01166 Bpe-Chr2:15318259 Bpe08g00390 Bpe-Chr8:2396749 4.32E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g554 . . Bda01g00921 . . . . . . . . . . . . . . Bhi04g00908 . . . . . Lcy13g1457 Cla08g01181 . . . . . . . . Cone17ag1161 . . . . . . . . . Bpe02g01166 . Bma01g01366 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01042 Csa02g02228 Chy03g01289 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010527 1 1 1 1 1 1 2 1 1 1 1 1 2 0 0 2 1 1 2 1 1 0 1 1 0 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01166 Bpe_Chr02 FPKM 7.445549 9.395342 12.555176 13.835643 52.485035 45.192966 50.634544 18.981983 20.741228 19.485346