Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01168 ATGGGTACTGGATGGCGAAGAGCCTTCTGCACTACTGTTTCTCGAGATCCAGGATCCGATAAATTGGAGAAGAAAAAGAGAAGCTCTAGTCCTACCCCAAGTCCGAGAAGCTGCGTGAGATTAGGCTTCCTCTCCGGCGGAAGCAATTCTTCGACTCCGCGCTCGCAGGTGTCTCCGCCAATCTTGAGCCCCACCTTGCGCTGCAGAACAACGTCGCAAGAAGCCGTTCAAACGGCTAACGCTAAGACCCAGAGAATAGCTTTGGGCTCAAACCCTTCTTCCCCCCGATCTCCTCTCAAGCTGTCTCTCTTCAAAAGCAGCTTCAAGTTCAGGAGTAGCTGCGGAATCTGTCTGAACAGCGTCAAAACTGGTCAGGGGACAGCGATCTACACGGCGGAGTGTGCTCATGCCTTCCATTTTCCTTGCATCGCCGCTCATGTCGGAAAACATAACAGCCTCATCTGCCCAGTTTGTAACACCACCTGGAAAGACGTTCCGATGCTCTCCGTCCATAAAAACGCCGTCTTTAAGTCGCCGGAACACCCAGAAGAAGTGGTTGTATATCAGAACATTGTAAAACCCAAAACAGAAGACAAAAGAATGATAGATTCATCTCCAAGAGCCTGTAAAGTTAACCGCGACCACGTGCTGCGGCAGCTCAAGAATAAAACGGCCTACGATGACGACGAGCCTCTTCTATCTCCGACCTCGGGTGGTCAGATAATCCCAATTCCGGAGGCTGAAGAAAACGACGACGAAGATGACGAGGAAGAGTTTCAGGGATTCTTCGTTAATTCTGAAACATCTTCAATCAAGTCATATCGGTCAGACTCAGAAATCAACCCGAGGGAATTGAGGGGGAGCGTACAAGCTAGATTTCTTCCGGAATCAGCTCTAATTTCAACTTGCCAAGGTACCGAAACTCACGTCGTTGCTTTACGAGTCAAAGCGCCTCCTCCGCCTTCTTCTCGCGGCAGTAGCAGCTCTCTCCTTTTCCAACCTTCACACAGAGCGCCCATCGATTTAGTGACAGTGCTTGACGTGAGTGGGAGCATGAGTGGCACTAAATTGCTTATGCTGAAGCGCGCTATGCGCTTGGTGATATCGTCTCTTACCTCCGCCGACCGCCTTTCTATCGTCGCATTCTCTGCAACTGCAAGGCGTTTATTGCCTCTTAAAAAAATGACCTCTTCTGGCCAGCTGGCGGCTAGGAAGATAATCGAGAGGCTCGTCTGTGGTCAAGGGACGAGCGTTGGGGAAGCCTTGAGAAAGGCTACCAGAGTGCTGGAAGATCGAAGGGATAAGAATCCTGTTGCCAGTATAATGCTTTTATCAGACGGTCAAGATGAAAGGGTCGGTAACAAGGGTAGAAATCAACGGCAGGAGATGAGGTCGAACGAGTCTTCTACTCGATTCGCTCACATTGAGATTCCTGTTCATGAGTTTGGGTTCGGCGAACATGGGCGGCGATTCACCAACGAACCGGCCGAGGAGGCCTTTGCAAAATGCGTTGGTGGGCTGTTAAGTGTTGTGGTCCAGGACTTAAGGATTCAGCTCAGTTTTCAATCCGGATCATCTCGGGCTGAGATTTCCGCCATTTATTCCGCCAATGGAAGACCAACAATCTGTAGTTCTGGCTCTCTGCGCCTCGGAGATTTGTACGCCGAGGAAGATAGAGAGTTACTGGTGGAGCTCAAACTTGCATCTTCCGCGGTCGACTTCCACCGCGTGATCTCAGTTCGGTGCCTTTACAAAGACCCTTCGACCCAAGAGGTTGTTTATGGCAAAGAACAAGGGCTTCTCATACCGCGTCTGCAATCCAGTCGAACGTCGGCGCCGAAAGCAGAGCGCTTGAGAAATCTATTCATCACTACTCGTGCTGTAGCCGAATCGCGGAGATCCATCGAGCACGACGACTATACGAGTGCCCACCGCCTGCTGGCGTCTGCCCGAGGTCTCCTTACGCAGTCGAGCTCGATATCAGCCGATGAATACATTCGAGCATTAGAGGCGGAGCTCGCAGAGCTTCAATGGCGAAGACAGCAAATAATGACCCACCGGAGAAGAGGCAGCGATCGAGACACAATAGGATCTTTAATGGAGCAAAACGAGGAGGAGCTAACGCCTACATCGGCTTGGAGAGCAGCTGAGAGGCTGGCTAAAGTGGCCATGATGAAGAAGTCGTTAACCAGTAGAGTCAGCGACTTACACGGGTTCGAAAACGCCAGATTTTAA 2235 50.96 MGTGWRRAFCTTVSRDPGSDKLEKKKRSSSPTPSPRSCVRLGFLSGGSNSSTPRSQVSPPILSPTLRCRTTSQEAVQTANAKTQRIALGSNPSSPRSPLKLSLFKSSFKFRSSCGICLNSVKTGQGTAIYTAECAHAFHFPCIAAHVGKHNSLICPVCNTTWKDVPMLSVHKNAVFKSPEHPEEVVVYQNIVKPKTEDKRMIDSSPRACKVNRDHVLRQLKNKTAYDDDEPLLSPTSGGQIIPIPEAEENDDEDDEEEFQGFFVNSETSSIKSYRSDSEINPRELRGSVQARFLPESALISTCQGTETHVVALRVKAPPPPSSRGSSSSLLFQPSHRAPIDLVTVLDVSGSMSGTKLLMLKRAMRLVISSLTSADRLSIVAFSATARRLLPLKKMTSSGQLAARKIIERLVCGQGTSVGEALRKATRVLEDRRDKNPVASIMLLSDGQDERVGNKGRNQRQEMRSNESSTRFAHIEIPVHEFGFGEHGRRFTNEPAEEAFAKCVGGLLSVVVQDLRIQLSFQSGSSRAEISAIYSANGRPTICSSGSLRLGDLYAEEDRELLVELKLASSAVDFHRVISVRCLYKDPSTQEVVYGKEQGLLIPRLQSSRTSAPKAERLRNLFITTRAVAESRRSIEHDDYTSAHRLLASARGLLTQSSSISADEYIRALEAELAELQWRRQQIMTHRRRGSDRDTIGSLMEQNEEELTPTSAWRAAERLAKVAMMKKSLTSRVSDLHGFENARF 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15363231 15365549 + Bpe009030.1 Bpe02g01168 99317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01168 744 Pfam RING-like zinc finger 114 143 IPR001841 -
Bpe02g01168 744 MobiDBLite consensus disorder prediction 225 256 - -
Bpe02g01168 744 SUPERFAMILY vWA-like 339 518 IPR036465 -
Bpe02g01168 744 SMART VWA_4 339 525 IPR002035 -
Bpe02g01168 744 MobiDBLite consensus disorder prediction 449 469 - -
Bpe02g01168 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 169 IPR013083 -
Bpe02g01168 744 MobiDBLite consensus disorder prediction 43 63 - -
Bpe02g01168 744 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 744 - -
Bpe02g01168 744 ProSiteProfiles VWFA domain profile. 341 487 IPR002035 -
Bpe02g01168 744 MobiDBLite consensus disorder prediction 11 63 - -
Bpe02g01168 744 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 744 - -
Bpe02g01168 744 Pfam von Willebrand factor type A domain 342 448 IPR002035 -
Bpe02g01168 744 SUPERFAMILY RING/U-box 113 164 - -
Bpe02g01168 744 Gene3D von Willebrand factor, type A domain 341 522 IPR036465 -
Bpe02g01168 744 MobiDBLite consensus disorder prediction 450 469 - -
Bpe02g01168 744 ProSiteProfiles Zinc finger RING-type profile. 114 159 IPR001841 -
Bpe02g01168 744 SMART ring_2 114 158 IPR001841 -
Bpe02g01168 744 CDD vWA_C3HC4_type 340 512 - -
Bpe02g01168 744 Coils Coil 666 686 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01168 - - - cpap:110809457 867.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00152 Bpe02g01168 CCT
Bpe02g01168 Bpe14g00499 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01168 Bpe-Chr2:15363231 Bpe15g00274 Bpe-Chr15:14194139 2.22E-145 dispersed
Bpe11g00932 Bpe-Chr11:6902818 Bpe02g01168 Bpe-Chr2:15363231 2.10E-06 transposed
Bpe13g01224 Bpe-Chr13:17543327 Bpe02g01168 Bpe-Chr2:15363231 7.41E-07 transposed
Bpe14g00499 Bpe-Chr14:4437739 Bpe02g01168 Bpe-Chr2:15363231 0 wgd
Bpe02g00152 Bpe-Chr2:1051491 Bpe02g01168 Bpe-Chr2:15363231 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01168 Bpe_Chr02 FPKM 44.281975 44.26543 28.861462 29.549269 81.936523 78.677261 86.844353 2.761668 2.234113 2.790661