Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01175 ATGAGGAAGCTGATAGGGTCGAGGCCTCCAAGCTGCGAGAAAAGATGCAGAGGGTGTGGATATTGTGAAGCAGTTCAGGTCCCCATTCTTCCTCAAGAATTACAGCAGGAAAGAAGAAGAGCAGTAAAGGCTAAAAACTCCATAGATGAATACTCAAGAGGAGATTATATGTCCAACTACAAACCTTTGAGTTGGAAATGCAAGTGTGGGGATTTCATTTTCAATCCGTGA 231 43.29 MRKLIGSRPPSCEKRCRGCGYCEAVQVPILPQELQQERRRAVKAKNSIDEYSRGDYMSNYKPLSWKCKCGDFIFNP 76
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15431874 15432104 - Bpe009036.1 Bpe02g01175 99324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01175 76 PANTHER EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4 2 76 IPR039455 GO:0010374
Bpe02g01175 76 Pfam Epidermal patterning factor proteins 5 76 - -
Bpe02g01175 76 PANTHER OS07G0132300 PROTEIN 2 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01175 - - - gmx:100804735 108.997
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01175 Bpe14g00509 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01175 Bpe-Chr2:15431874 Bpe02g02193 Bpe-Chr2:23088353 2.86E-11 dispersed
Bpe06g00080 Bpe-Chr6:1122535 Bpe02g01175 Bpe-Chr2:15431874 3.13E-18 transposed
Bpe10g00063 Bpe-Chr10:905968 Bpe02g01175 Bpe-Chr2:15431874 2.15E-17 transposed
Bpe15g00280 Bpe-Chr15:14252458 Bpe02g01175 Bpe-Chr2:15431874 2.83E-24 transposed
Bpe01g00744 Bpe-Chr1:6618795 Bpe02g01175 Bpe-Chr2:15431874 2.09E-07 transposed
Bpe14g00509 Bpe-Chr14:4502361 Bpe02g01175 Bpe-Chr2:15431874 1.69E-37 wgd
Bpe02g01175 Bpe-Chr2:15431874 Bpe04g00406 Bpe-Chr4:2554683 8.72E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g587 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0186 . . . . . Blo17g00077 Blo18g00089 . Bda13g01338 Bpe02g01175 Bpe14g00509 Bma01g01355 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001227 3 3 2 3 3 2 4 2 2 3 2 2 3 2 2 4 2 1 4 2 2 2 3 2 2 2 2 6 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01175 Bpe_Chr02 FPKM 1.026557 1.279718 1.263668 1.206312 2.194751 2.122207 2.18666 1.768963 1.808908 1.787546