Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01177 ATGAAAAGTTTGCCGCTTTTCCATCTTTTGCTCCACTCTTTCATCTTGGTTTCGACCCAGATCATCAGCTTCGCCTTGACACCTCCACCGGCAGTGCAGTGCAACGAAAATGGCTGCACCCTCCGAAACTCCTACGGCGTTTGGGGAGATAGAAAACTATGCAAATTCTCTACAGTTAAGTACCCTACGACGGAAGAAGAACTGCTTTTAGCCGTGGCCTACGCGAACAAGAACAAAATCAAACTCAAAGTTGTGAGCAAATTCTCACACACCATTCCAAAGCTAGCTTGTGCAGACGAAGAACAATCCACGACTTCATTGCTAATTAGCACTGCGAATTACAGCTCCGGTATTGTTATAGACGAAGAAAATCTAGCCGTGACAGTAGATTCCGGCGTCGGGCTCCGGCAGCTGATTGAACAGGTTGAAGCCGCGGGGTTGAGCCTGGTGGCTGCGCCGTACTGGGAGGGAGTGAGCGTGGGGGGGCTGATCAGCACCGGTGCTCATGGAAGTTCATGGTGGGGGAAAGGAGGGTCTGTTCATGATCACGTCATCGGACTTAGTCTGATTATTCCGGCAAAATTTGACGAAGGATACGCTAAAATTATGAGGCTGGAAGAAAATGATCCACTTCTCAACGCTGCCAAAGTTTCGTTGGGAGTTTTAGGTGTTATCTCCAAGGTAAAGCTGTCGCTGGAGAGAAGATTTAAGAGGAGCATAAGCTATAATTTTACAGACGATGATGGAATGGAGGATCTGTACAGAGAGCATGCGAAGAAGTATGAATTTGCAGACATAACTTGGTACCCGTCAAAGCATTTGGCTGTGTACAGATATGATCGGAGAGTTGGTTTAGATGTTTCCGGCGATGGTGTTTACGACTTCATCGGATTTCAACCCAATTCCATCCTCATTTCCAGTGCAGTTAGAGCCATCGAAAAAACATGCGAAAGAGAAAGAAATGCGAAAGGAAAATGCTTGATGGCTTCGTCCGTCGTAGGATACAAGAAGCTTGTCGGAAATGGGTTGAAGAACAATGGCTTGATTTTCACCGGCTACCCAGTTGTCGGATTTCAAGCAAAAATGCAAACTTCAGGCTCCTGTTTGTATTCGAAGGCGATAGATACCACTTGCGCGTGGGATCGGAGAATAAAAGGTCTATTTTTCTACGAAACGACCGCCATTTTCACACCTTCAAGCTTTGATCTCTTTATCAAAGACGTAAAATCACTGCGAGACCAAAACCCAGAAAATTTCTGTGGCGTAGACCTCTACAATGGCTTCCTAATCCGATTCATCAAGGGCTCCGACGCTTTCTTAGGACAATCTGAAGATTCGGTGGTGGTCGATTTCAACTACTATCGCTCAGACGAGGCTTCAGATCCAAGATTAAACCAGGATGTGTGGGAAGAGGTTGAGCAAATGGCGTTTTTCAAGTATGGAGCTAGACCGCATTGGGGAAAAAATCGGAACGTAGGGTTCTTGAATGTGAGGGGAAAATACCCAAAGTTCGACAAGTTTTTGTCGGCCAAGAAACGATTGGATCCTCAAAAGATGATGTCGAGTAAGTGGTCGGACAAGGTGCTTTTCGGAGTGGAAACTGAAAACGGCGATGGGTGTGCATTGGAAGGACACTGCATTTGCTCTGAAGACCGCCATTGTTGGCCGGAGAAAGGGTATTTCTGCAGATATGGTCTTGTTTATAAGAAAGCTAGAGTCTGTAGGCATTCTTCATTTTCCATTGAATGA 1749 45.97 MKSLPLFHLLLHSFILVSTQIISFALTPPPAVQCNENGCTLRNSYGVWGDRKLCKFSTVKYPTTEEELLLAVAYANKNKIKLKVVSKFSHTIPKLACADEEQSTTSLLISTANYSSGIVIDEENLAVTVDSGVGLRQLIEQVEAAGLSLVAAPYWEGVSVGGLISTGAHGSSWWGKGGSVHDHVIGLSLIIPAKFDEGYAKIMRLEENDPLLNAAKVSLGVLGVISKVKLSLERRFKRSISYNFTDDDGMEDLYREHAKKYEFADITWYPSKHLAVYRYDRRVGLDVSGDGVYDFIGFQPNSILISSAVRAIEKTCERERNAKGKCLMASSVVGYKKLVGNGLKNNGLIFTGYPVVGFQAKMQTSGSCLYSKAIDTTCAWDRRIKGLFFYETTAIFTPSSFDLFIKDVKSLRDQNPENFCGVDLYNGFLIRFIKGSDAFLGQSEDSVVVDFNYYRSDEASDPRLNQDVWEEVEQMAFFKYGARPHWGKNRNVGFLNVRGKYPKFDKFLSAKKRLDPQKMMSSKWSDKVLFGVETENGDGCALEGHCICSEDRHCWPEKGYFCRYGLVYKKARVCRHSSFSIE 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15445501 15447428 - Bpe009038.1 Bpe02g01177 99326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01177 582 Pfam FAD binding domain 59 191 IPR006094 GO:0050660
Bpe02g01177 582 PANTHER GULONOLACTONE OXIDASE 17 577 - -
Bpe02g01177 582 SUPERFAMILY FAD-binding/transporter-associated domain-like 45 232 IPR036318 GO:0050660
Bpe02g01177 582 Gene3D - 116 233 IPR016169 -
Bpe02g01177 582 Pfam D-arabinono-1,4-lactone oxidase 430 527 IPR007173 GO:0003885|GO:0016020
Bpe02g01177 582 TIGRFAM pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase 28 575 IPR010030 -
Bpe02g01177 582 Gene3D - 398 491 - -
Bpe02g01177 582 PANTHER L-GULONOLACTONE OXIDASE 3 17 577 - -
Bpe02g01177 582 ProSiteProfiles PCMH-type FAD-binding domain profile. 51 235 IPR016166 GO:0071949
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01177 K00103 GULO; L-gulonolactone oxidase [EC:1.1.3.8] - rcu:8271194 843.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00670 Bpe-Chr2:4475045 Bpe02g01177 Bpe-Chr2:15445501 7.12E-08 dispersed
Bpe02g01177 Bpe-Chr2:15445501 Bpe14g01072 Bpe-Chr14:8044379 3.02E-173 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g313 . . . . Bpe02g01177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g00932 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005085 3 1 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 6 1 1 1 1 1 0 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01177 Bpe_Chr02 FPKM 8.434459 8.936815 11.41204 13.171162 10.02352 9.124959 10.751075 12.447911 11.378139 12.825377