Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01180 ATGGAAATCGATAGAGAGGATGAGCGTACGCCAAACCAGCTAAGATCACTTGCTTGTTCCCGCAATATCCTCCATCGGGCTCATGGCTCTGCCAGTTGGTCTCAAGGAGATACGAAAGTACTTGCTGCTATTTACGGACCAAAAGCCGGTACGCGGAAGAATGAAAACCCCGAGAAAGCTTGCTTTGAGGTTATTTGGAAGCCCAAAACAGGGCAAATTGGGAAACTGGAAAAGGAGTATGAGATGATACTAAAGAGAACTCTGCAGAGTATCTGCATTTTGAACATCAATCCTAATACAACCACCTCGGTGATAATTCAGCTTCTTCCCTGTGCCATAAATGCCGCATGTGTTGCCCTTGTAGATGCTGGAATTCCATTAAAGCACCTTGCTGGTAGTAAAAATTTATACAAATGTGCTTACTATTCAGTTGATAATTTGACCCTTTTTGCTGACCATGCTATGCTGGTTTATGCAGTTTCAATATGTTGTTGTTTGCAAGCAAGTGGACGTGTAGTTTTGGACCCTACAAAAGCCGAAGAGCAGAAGATGAAGGCATTTGCATATCTGGTCTTCCCAAACTCACCCATCTCTGTTATTCCCGAAGGATCATCAGGTACTGAAGGTGAACCAATTGAAAATGGGCTCATAACTTCTGTGACTCAGGGTGTAATGCTAGTGGAGGATTATGTTAACTGCCTAGAACAAGGGCGTGCAGCGAGTGCGAAAATGTCTTCTTTCCTTAGGAGAAGTTTGCTGCCGAACGACAACCAAACCCATTCATCCATTGCCAGGTAA 798 43.98 MEIDREDERTPNQLRSLACSRNILHRAHGSASWSQGDTKVLAAIYGPKAGTRKNENPEKACFEVIWKPKTGQIGKLEKEYEMILKRTLQSICILNINPNTTTSVIIQLLPCAINAACVALVDAGIPLKHLAGSKNLYKCAYYSVDNLTLFADHAMLVYAVSICCCLQASGRVVLDPTKAEEQKMKAFAYLVFPNSPISVIPEGSSGTEGEPIENGLITSVTQGVMLVEDYVNCLEQGRAASAKMSSFLRRSLLPNDNQTHSSIAR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15474006 15478245 - Bpe009041.2 Bpe02g01180 99329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01180 265 CDD RNase_PH_RRP46 14 249 - -
Bpe02g01180 265 SUPERFAMILY Ribosomal protein S5 domain 2-like 11 125 IPR020568 -
Bpe02g01180 265 SUPERFAMILY Ribonuclease PH domain 2-like 155 252 IPR036345 -
Bpe02g01180 265 PANTHER EXOSOME COMPLEX COMPONENT RRP46 150 252 - -
Bpe02g01180 265 PANTHER EXOSOME COMPLEX COMPONENT 1 132 - -
Bpe02g01180 265 PANTHER EXOSOME COMPLEX COMPONENT 150 252 - -
Bpe02g01180 265 Gene3D - 1 261 IPR027408 -
Bpe02g01180 265 Pfam 3' exoribonuclease family, domain 1 13 126 IPR001247 -
Bpe02g01180 265 PANTHER EXOSOME COMPLEX COMPONENT RRP46 1 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01180 K12590 RRP46, EXOSC5; exosome complex component RRP46 - vvi:100262803 358.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01180 Bpe-Chr2:15474006 Bpe11g01243 Bpe-Chr11:9260569 7.07E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g295 . . . . Bpe02g01180 . . . . Cmo12g00208 . . . Car12g00239 Sed12g1115 Cpe07g00218 . Bhi04g00842 Tan02g2563 Cmetu04g1511 . Hepe10g0359 . . . . . . . . . . . Cone17ag1121 . . . . Cme03g01739 . . Bda01g00935 . . . . . . . . . Cma12g00255 . . . . . . . . . . . Cla08g01225 Cam08g1684 Cec08g1263 Cco08g1383 Clacu08g1382 . Cre08g1167 Lsi08g01088 . Chy03g01246 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012378 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01180 Bpe_Chr02 FPKM 2.374275 3.277393 28.384212 29.475122 77.167229 70.844223 75.669586 13.013024 14.962727 12.427132