Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01182 ATGGCTGCTGAAGCTCGACATTCAGAAACTGAGAGCACCTCGAATTCTAACTTCAACTCTTCCTCATCCCCACCATCGTCCCCTTCTTCGACACCCTCCACTCACTCTCTTCAGGACACTCTTTCTAACCCTGATTTTTCTTCGTCGGAACAGAAGAACAAGCGAATGAGAGATACCAGCAGGCACCCACTTTTCAGAGGCGTTCGGATGCGCAGTTGGGGCAAATGGGTGTCTGAAATTCGAGAGCCTCGCAAGAAATCGCGCATTTGGCTCGGAACTTTCCCGACGCCGGAAATGGCTGCCAGAGCTCACGACGTCGCCGCTTTAAGCATCAAAGGTAATTCCGCAATTCTTAACTTCCCCGACCTCGTTGACTCTCTTCCACGCCCGGTATCTCTCGCTCCTAGAGATGTCCAAGCGGCAGCAGTGAAGGCAGCTCAGATGTACAAATTTGAGTCGGCATCTTCGACGCCGTCATTGTCGTCGTTAGTTTCGGCGGCGTCGACGGAGAACGAATCTGACGATTTGGGGGAGATCGTTGAGCTGCCAAGCTTAGGAACGAGTTACGAGTCGAACGAGTTGAGGAACGAAATCGTGTTGATGGACTCAGGGGATGGGTGGTTATACCAACCGCCATGGTTGCAAAGCTTGGAGGATAGTGGATTCAACAATGCGAGCGAGGAGTTGACTGCCGGAAGTTGCGGTTTGATAGCCGGCGGTTTTGAGAGTTTGCTTTGGGAGTATTGA 747 51.94 MAAEARHSETESTSNSNFNSSSSPPSSPSSTPSTHSLQDTLSNPDFSSSEQKNKRMRDTSRHPLFRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPDLVDSLPRPVSLAPRDVQAAAVKAAQMYKFESASSTPSLSSLVSAASTENESDDLGEIVELPSLGTSYESNELRNEIVLMDSGDGWLYQPPWLQSLEDSGFNNASEELTAGSCGLIAGGFESLLWEY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15488200 15488946 + Bpe009043.1 Bpe02g01182 99331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01182 248 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Bpe02g01182 248 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Bpe02g01182 248 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Bpe02g01182 248 MobiDBLite consensus disorder prediction 1 63 - -
Bpe02g01182 248 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Bpe02g01182 248 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Bpe02g01182 248 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Bpe02g01182 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 247 - -
Bpe02g01182 248 MobiDBLite consensus disorder prediction 7 49 - -
Bpe02g01182 248 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Bpe02g01182 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 247 - -
Bpe02g01182 248 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01182 Bpe-Chr2:15488200 Bpe08g00494 Bpe-Chr8:3241344 3.12E-62 dispersed
Bpe14g00516 Bpe-Chr14:4538438 Bpe02g01182 Bpe-Chr2:15488200 4.50E-112 wgd
Bpe02g00170 Bpe-Chr2:1171933 Bpe02g01182 Bpe-Chr2:15488200 1.49E-76 wgd
Bpe02g01182 Bpe-Chr2:15488200 Bpe04g00398 Bpe-Chr4:2498008 8.56E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20952 PF00847 AP2 2.20E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01182 K09286 - zju:107420677 273.863