Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01199 ATGTTAGAGCTTAAAATGCATTCCTTGAAGTCGTCAATAATGCAGAGAATCAGCGTCTTGAGCATCAAAGAAATCGAAGGCTTCTTCTTTGCTATTTTGCGAAACTGCACAAACCTTGTAGAATTGAAGAAAACTCATGCCCATATAATCAAGTTCTCACTTTCACAGAGCAATTACTTGGCTACGAAAATGGTGGATGTTTGCAGCGGTTGTGCGAACATGGTCTACGCAAATTGCCTCTTTAAGCAAGTTTTTAATCCAAATTTATACTTGCTCAACGCAATGATCAGAGCTTATACCCATAATCACAAGTATGATCTAGCGATCGCCATGTATAAGCAAATGGTATTTCACCCGCTTATTTTCCCTGATGAATTCACTTTCCCATTTGTCATCAAATCTTGCTCGGGGCTTCTTCTTCATGATCTCGGCAAGCAAGTTCACGCTCACATTTGGAAAATCGGGCCAAATGCTAATCACGTGATGGAAAATTCATTACTGGCTATGTATGTCAAATGGCATGCTAGAATAGGACAGATGAAAAATGCAAGAGCCATGTTTAATAAAATGCCTCAGAAGACTACTGTCTCTTGGACGGCCATGATTTCAGGCTACACTCAAATTGGGTGCTACGGCGAAGCCCTGGATTTTTTCTGGAAGATGCAAAAGATGAGTGTTCAACTTGATGATATAACTATTCTATCCGTCTTACCAGCTTGTGCTCATCTTGGAGCTCTGGAAGCCGGGAAATGGATTCATTTCTACGCAGATAAAAATGGGTTTATGAAGACGAGGCAAATCTGTAATGCTCTCATTGAAATGTATATTCGATGTGGCTGCCTCGATCGAGGGTGGGAGTTGTTTAATCAAATGCCAGAGAAGGATGTGATTTCATGGAGTACTATGATTTTAGGGTTTGCAAATCATGGGAAAGCTCAGCAAGCCGTTGAACTCTTTGAAGAAATGCAAAAATCAAAGATTAAGCCTAATGCCATTACATTTCTTGGCCTTTTGTCAGCTTGTAGCCATGCAGGACTATGGAATGAAGGGCTAAATTTCTTCCATTCCATGAAAAGAGATTTTCGAGTGGATCAGGAAATCGAGCATTATGGATGTTTGATTGATCTGCTTGGACGTACTGGGCACTTTGATCAGGCTCTCGATATTATAAAAATGATGCCGATGAAGCCAGATTCGAAGATTTGGGGTTCGCTTCTGAGTTCGAGTAGGATTCATAGCAATTTAGAGATTGCTAATATCGCAATGAACTGGCTGATGGAGTTCGAACCAGATGATGCAGGAAACTACGTGTTGCTTGCAAATATTTATGCAGATCTCAGAAAGTGGGACGGGATGTCGAGGATAAGGAAGCTCATGAGAACTAAAAATATGAAGAAAACTCCGGGGTGTAGCATGATTGAAGTTAACAATCTGGTTCAAGAGTTTCTCTCGAGCGACATCTCAAAGCCTTTTACAAGACAGATGTTATGGATGATAGAGCTGCTGTCCTTCGACCCGAACGGAGCTGACGAAAGTGACATAACCACTCTGGAGAATTGA 1560 41.15 MLELKMHSLKSSIMQRISVLSIKEIEGFFFAILRNCTNLVELKKTHAHIIKFSLSQSNYLATKMVDVCSGCANMVYANCLFKQVFNPNLYLLNAMIRAYTHNHKYDLAIAMYKQMVFHPLIFPDEFTFPFVIKSCSGLLLHDLGKQVHAHIWKIGPNANHVMENSLLAMYVKWHARIGQMKNARAMFNKMPQKTTVSWTAMISGYTQIGCYGEALDFFWKMQKMSVQLDDITILSVLPACAHLGALEAGKWIHFYADKNGFMKTRQICNALIEMYIRCGCLDRGWELFNQMPEKDVISWSTMILGFANHGKAQQAVELFEEMQKSKIKPNAITFLGLLSACSHAGLWNEGLNFFHSMKRDFRVDQEIEHYGCLIDLLGRTGHFDQALDIIKMMPMKPDSKIWGSLLSSSRIHSNLEIANIAMNWLMEFEPDDAGNYVLLANIYADLRKWDGMSRIRKLMRTKNMKKTPGCSMIEVNNLVQEFLSSDISKPFTRQMLWMIELLSFDPNGADESDITTLEN 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15711383 15713023 + Bpe009059.3 Bpe02g01199 99348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01199 519 Pfam E motif 412 474 IPR046848 -
Bpe02g01199 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 294 IPR002885 -
Bpe02g01199 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Bpe02g01199 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Bpe02g01199 519 Pfam PPR repeat 93 116 IPR002885 -
Bpe02g01199 519 Pfam PPR repeat 369 394 IPR002885 -
Bpe02g01199 519 Gene3D Tetratricopeptide repeat domain 365 497 IPR011990 GO:0005515
Bpe02g01199 519 Gene3D Tetratricopeptide repeat domain 249 364 IPR011990 GO:0005515
Bpe02g01199 519 Pfam PPR repeat family 194 241 IPR002885 -
Bpe02g01199 519 Pfam PPR repeat family 294 342 IPR002885 -
Bpe02g01199 519 PANTHER OS05G0439300 PROTEIN 22 507 - -
Bpe02g01199 519 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Bpe02g01199 519 TIGRFAM PPR: pentatricopeptide repeat domain 297 331 IPR002885 -
Bpe02g01199 519 TIGRFAM PPR: pentatricopeptide repeat domain 92 116 IPR002885 -
Bpe02g01199 519 TIGRFAM PPR: pentatricopeptide repeat domain 267 296 IPR002885 -
Bpe02g01199 519 Gene3D Tetratricopeptide repeat domain 120 248 IPR011990 GO:0005515
Bpe02g01199 519 Gene3D Tetratricopeptide repeat domain 29 119 IPR011990 GO:0005515
Bpe02g01199 519 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 22 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01199 - - - qsu:112004410 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01199 Bpe-Chr2:15711383 Bpe10g00872 Bpe-Chr10:14543215 9.52E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g400 . . . . Bpe02g01199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01329 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012728 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 0 0 0 1 1 0 1 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01199 Bpe_Chr02 FPKM 4.372789 4.683454 1.656468 1.328639 0.831166 0.700368 1.131043 0.677065 0.628046 0.797533