Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01228 ATGGATGTTCCCCCCTTGGAACACAGTGAAACGGAAACTTACCCTTTAATAATGGAAAGATCAGAAAATCTTAACAACACTGAACACATTGTGGACATATTAGATACTGCTGATACTTCATCATCAAGGTTGTCTCATGATCGACAGTACACTGGGTCAAATGCATCACAGATTGAAGATAGACCTTCAAGCAGTACACGAGTGCCTACATCTGAACCACCAATGGCTCTTAATGGATCAAACTCTCGGAATTCCTCATTCATTAGGAGAGGGAACACACGTCGTCGTCAGAGTCCATTGAATTCCAGTTTATGGATATCTATTGAACTTGTTCTTACTCTAAGTCAGATTGTTGCAGCTGTTGTTGTTTTGTCATTGTCGAGGCATGAGCATCCACGTGCCCCATTGTTTCAGTGGATTGTGGGATACGCATCTGGTTGTGTCGCTACCCTCCCTCTTCTCTACTGGCGTTATAGGCATCGTAACCAGGCTTTAGAGCAGGATTCATCTCAATCTCGCCAGAATTCTACTCAAGTTTCTCTTTCAGCTTCTAGGACATCAGAATGGGAAGATCGCCAAACTGCTGTCTCTCCTCCTACTAACAATCAAAGTTCTGGTGCACTTAGTGCGAGGCTGAAGATATGGGTAGAATATTTTAAGATGGGCTTGGATTGTTTTTTTGCTGTTTGGTTTGTAGTTGGCAATGTGTGGATCTTTGGAGGGCACTCGTCAGCCTCTGAGTCTCCTAACTTGTACAGGTTATGTATAGTTTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCCTTCATTCTATGCGTGACCATCTGCTGTTGTCTGCCCTGTATAATTTCCATCCTTGGGTTTCGAGAAGATCTGTCACAAACTAGGGGTGCCACTACTGAATCAATCGATGCTTTGCCTACATACAAATTCAAGGTGAAGAAAGGTAAAAGTGGGGATGAAAACAACTCAGGTGGTGGTGAAGGTGGGATTGTGGCTGCTGGAACGGAAAAGGAACGCGTTATTTCTGGTGAAGATGCTGTTTGTTGCATCTGCCTGGCTAAATACTCCAACAATGATGAATTGAGAGAGTTGCCATGTTCTCACTTCTTTCACAAGGATTGTGTGGATAAATGGCTGAAGATCAACGCTTTATGTCCTCTCTGCAAGACAGAGGTTGGTGAGAGCATCATAGGCTCACTCAACGGCTCAAGTGCTAACCACCACCCAGGCAATAATAGGGCTGAGACCACCTTGACCCTGTTTTAA 1272 43.95 MDVPPLEHSETETYPLIMERSENLNNTEHIVDILDTADTSSSRLSHDRQYTGSNASQIEDRPSSSTRVPTSEPPMALNGSNSRNSSFIRRGNTRRRQSPLNSSLWISIELVLTLSQIVAAVVVLSLSRHEHPRAPLFQWIVGYASGCVATLPLLYWRYRHRNQALEQDSSQSRQNSTQVSLSASRTSEWEDRQTAVSPPTNNQSSGALSARLKIWVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASESPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLSQTRGATTESIDALPTYKFKVKKGKSGDENNSGGGEGGIVAAGTEKERVISGEDAVCCICLAKYSNNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESIIGSLNGSSANHHPGNNRAETTLTLF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15913249 15915408 - Bpe009086.2 Bpe02g01228 99377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01228 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 398 IPR013083 -
Bpe02g01228 423 MobiDBLite consensus disorder prediction 40 94 - -
Bpe02g01228 423 Pfam Ring finger domain 350 391 IPR001841 -
Bpe02g01228 423 ProSiteProfiles Zinc finger RING-type profile. 350 391 IPR001841 -
Bpe02g01228 423 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 408 - -
Bpe02g01228 423 MobiDBLite consensus disorder prediction 167 205 - -
Bpe02g01228 423 SMART ring_2 350 390 IPR001841 -
Bpe02g01228 423 SMART ringv_2 349 391 IPR011016 GO:0008270
Bpe02g01228 423 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 408 - -
Bpe02g01228 423 SUPERFAMILY RING/U-box 342 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01228 Bpe-Chr2:15913249 Bpe07g00121 Bpe-Chr7:869422 3.97E-50 dispersed
Bpe05g00717 Bpe-Chr5:20704160 Bpe02g01228 Bpe-Chr2:15913249 2.89E-12 dispersed
Bpe07g00050 Bpe-Chr7:422197 Bpe02g01228 Bpe-Chr2:15913249 6.89E-09 dispersed
Bpe11g00597 Bpe-Chr11:4542952 Bpe02g01228 Bpe-Chr2:15913249 4.10E-55 transposed
Bpe10g00629 Bpe-Chr10:13045507 Bpe02g01228 Bpe-Chr2:15913249 1.08E-132 wgd
Bpe14g00565 Bpe-Chr14:4815386 Bpe02g01228 Bpe-Chr2:15913249 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01228 - - csv:101211818 607.446