Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01244 ATGGGAGAAACGAGGGACGCTGAATATGAGGACGAGCTCGTCGACTATGAAGATGAGGAGTATAAGGCATCCGACGCCGTTGGAGCCAAAGTCAATGGCGAGGCAGCGAAGAAGGGTTATGTCGGCATTCATAGCTCAGGATTCAGAGACTTTCTTTTGAAGCCAGAGCTTCTCCGGGCTATTGTGGACTCAGGGTTTGAGCACCCTTCAGAAGTTATATTTTACTTCCCCACGGCTCATTTCGTTCGAATGGATTTTTTTACTTCTTCTTCAGTGCAACATGAATGTATTCCCCAAGCTATTCTGGGTATGGATGTTCTTTGTCAAGCTAAATCCGGGATGGGAAAAACTGCTGTTTTCGTACTATCCACCCTGCAGCAAATTGACCCAGTAGCGGGTCAAGTTTCTGCCCTTGTTCTTTGTCATACAAGAGAGCTAGCATACCAGATTTGCCACGAGTTTGAGAGGTTCAGTTCTTACTTGTCTGATCTCAAAGTATCTGTGTTCTATGGTGGTGTCAATATTAGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATCGTTGTTGGAACTCCTGGAAGAATTTTGGCATTGGCAAGAGATAAGGATCTTTCTCTAAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAATCACTTGACATGAGGAAGGATGTGCAGGAGATTTTCAAGATGACGCCTCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATTCGTCCGGTTTGCCATAAATTTATGCAAGATCCTATGGAAATATATGTAGATGACGAGGCAAAGTTGACCTTGCACGGCCTTGTGCAGCACTACATCAAACTAACTGAAGCAGAGAAAAATCGGAAGTTGAATGACCTTCTAGATGCGTTGGACTTCAATCAAGTTGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTGAGCTGGATAAGTTACTGGTGGAGTGTAATTTTCCTTCTATATGCATTCACTCTGGCATGTCTCAGGAGGAAAGGTTTGTTATCTACCTATTGATTAACTCATCTATCGATTGTTTAAGGTTTTCAATCGTAATGGCAATAATCTGCTGGTGCAGGTTGACGCGTTACAAGGGTTTCAAGGAGGGGCATAAGAGGATTCTTGTTGCTACAGATTTGGTCGGTCGGGGTATTGACATTGAACGTGTGAACATTGTTATTAATTATGATATGCCAGATTCTGCCGACACTTATCTACACAGGGTTGGGAGAGCTGGAAGGTTTGGTACTAAAGGGCTGGCAATTACTTTTGTATCATCTGCTTCTGACACTGATGTTCTCAACAATGTGCAACAAAGGTTTGCAGTGAATATAATGGAACTTCCAGAGCAGATTGATACTTCTACTTACAGTATGTTCATATATTTTATCTTTAGCTAA 1443 41.93 MGETRDAEYEDELVDYEDEEYKASDAVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVIFYFPTAHFVRMDFFTSSSVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERFVIYLLINSSIDCLRFSIVMAIICWCRLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDTDVLNNVQQRFAVNIMELPEQIDTSTYSMFIYFIFS 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15989367 15992775 - Bpe009100.2 Bpe02g01244 99393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01244 480 CDD DEADc_DDX39 45 272 - -
Bpe02g01244 480 Pfam Helicase conserved C-terminal domain 296 430 IPR001650 -
Bpe02g01244 480 Pfam DEAD/DEAH box helicase 91 256 IPR011545 GO:0003676|GO:0005524
Bpe02g01244 480 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 374 469 - -
Bpe02g01244 480 Gene3D - 42 278 IPR027417 -
Bpe02g01244 480 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 374 469 - -
Bpe02g01244 480 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 351 - -
Bpe02g01244 480 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 27 351 - -
Bpe02g01244 480 SMART helicmild6 322 430 IPR001650 -
Bpe02g01244 480 Gene3D - 279 474 IPR027417 -
Bpe02g01244 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 443 IPR027417 -
Bpe02g01244 480 SMART ultradead3 85 286 IPR014001 -
Bpe02g01244 480 CDD SF2_C_DEAD 283 439 - -
Bpe02g01244 480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 270 IPR014001 -
Bpe02g01244 480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 470 IPR001650 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g01244 Bpe14g00578 CCT
Bpe02g01244 Bpe04g00053 CCT
Bpe02g01244 Bpe04g00053 ECH
Bpe02g00566 Bpe02g01244 ECH
Bpe02g01244 Bpe14g00578 ECH
Bpe02g01244 Bpe02g00566 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01244 Bpe-Chr2:15989367 Bpe13g00955 Bpe-Chr13:15429694 1.26E-72 dispersed
Bpe14g00578 Bpe-Chr14:4889532 Bpe02g01244 Bpe-Chr2:15989367 0 wgd
Bpe02g00566 Bpe-Chr2:3649909 Bpe02g01244 Bpe-Chr2:15989367 0 wgd
Bpe02g01244 Bpe-Chr2:15989367 Bpe04g00053 Bpe-Chr4:464387 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01244 K12812 - csv:101217346 766.148