Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01248 ATGAAAATTCATGGTTTACTGTATTCGATAACCCTTGGGGCTTTGGCTACTCTTCTTCTTCCCCAACTCTGCTCTGCCAGTATTCTAAGGACAGGTAATATTTTACCGGGATTTCGAGGAGCTCAGATGACTTTCTTCGATCGCAATGGATTTTTTCTTTATTCCAACAGTTCAGAGTTCGCATTTGGGTTCCTCGCTAAACAAGATGCGACCATGTTTCTTCTCGCCGTCATCCACCGTAACAGCTCCAAAGCAGTCTGGTCTGCCAACAGGGACTCCCCAGTTTCGACGTCTGATGAATTCGTGTTCGACGAAAAGGGAAACGCTTTCCTCGAACGTGGCGGAAACGTTGTCTGGTCCACCGACACTGGTGATGAGGGAGTTTCTTCTCTGGGGTTGCAGGACACGGGAAATTTAGTTTTGATCGGAAACGACGGTGGAGTGATTTGGCAAAGTTTCAGCCATCCAACAGACACCCTTCTGTCAAACCAGGAATTTTCTGGGGGAATGAGGCTGACAAGCGACCGAGGAGCAAACAATTTAACTTATTTTCTGGAAATAAAGTCTGGGGATATGGTTTTATCTGTAAGTTTTCCGACTCCTCAGCCTTACTGGTCTATGAGAAAGGAGAGTCGTAAGACCGTCCCCGAAGAAGACGGGGTTGTTTCTTCAGCATCTCTCGTTGCAAATTCATGGCGAATATATAACAAAGACAAAGTCTTGCTCTGGCAATTCTTCTTCTCCACCACCAATTACACAGACTCTACTTCCATGGCGGTCTTAGAAAGTAATGGGATGATTAGTTTCCATTATCTTCCAAAAGGAGGGTCTATTATAGATTCAGCTACGAAAATACCTAAAGATCAATGCAGCCTACCTGTATTTTGTGGAGCTTACTTTGTTTGTTCTACGGACTCAAATTGTAAGTGTCTCTCTGTTCTCAACCCCCGATCAAATTGCCAAACTGGGATTGTTTCTCCTTGTGGTTCATCCAAGAGTAACATGCAGCTTGAGGATGCTGGAAATGGGCTCAATTACTTTGCTCTTGAGTTTCTTCAGCCCTTCTCTAAAACAGATTTGGATGGCTGCAAATCCTCTTGCATTTCTAACTGTTCCTGTCTAGCTTTGTTCTTCCAATCCAGTTCGGAAAGTTGTTTCTTGCTTGATAGAATCGGTAGCTTTCAGGGCTCCACCAGTGGGTCTGATTATGTTTCATACATCAAGGTCTTGGGTGAAGAAAAGAATAGTGGGGATGACAGAGGAGATGGAAATGGCAAGAAACACCATACTTTAGTTGTGGTGATTGCTATTTCCACGGTCTTCGCAGTTTCTTGTTTACTCGTTTTCAGTTACAGGTACATGAAGAAGAAGAAGAAGAAGTTATTGTCGGAGTCTCAGGATGGAAGCTCGGAAGACGATAAATTCTTCGAGGGCTTAACTGGAATGCCGATTCGATTCAGTTTCAAAGATCTTCAAGATGCGACCAACAATTTCTCTGTCAAGCTGGGGCAAGGAGGGTTCGGTTCAGTCTACGGGGGCGGCTTACCAGATGGGACTCGGCTGGCGGTGAAGAAGCTGGAAGGGATCGGACAAGGGAAGAAACAATTCCGAGCTGAAGTCAGCATCATCGGAAGCATCCATCACCTTCACTTGGTCAGGCTTAAGGGTTTCTGTGCAGAAGGAAGCCATCGTCTTCTTGCTTATGAATTCATGGCCAATGGGTCCTTGGACAAATGGATATTCAGGAAGAAGAAACAAGATTTCCTGCTAGATTGGGACAGAAGGTTCAATATAGCATTAGGAACAGCAAAAGGACTAGCTTACCTCCACCAAGACTGCGATGCCACCATAATTCACTGCGATATCAAACCAGAAAACGTCCTTCTCGATGAAAATTTTCTGGCCAAAGTTTCGGATTTCGGCCTGGCCAAGCTGATGACTCGAGAGCAAAGCCATGTGTTCACACAAATGAGAGGCACAAGAGGGTACCTCGCCCCGGAATGGATCATAAATTATGCAATATCAGAGAAAAGCGACATCTACAGCTACGGATTGGTGCTGCTCGAAATCATCGGCGGAAGAAAAAGCTACGATCCGACAGAACCTCCAGAGAAATCCCACTTGCCATCTTATGCTTTCAAGATGATGGAAGAAGGAAAATTACGAGACATTCTCGACCCGAACCTCGCAGCTGAGGAATGGGATGAGAGAGTTTCGACTGCAATAAAGGTGGCATTGTGGTGCATTCAGGAAGACATGGCCCAGAGGCCGGCCATGGCAAAAGTGATTCAAATGCTGGAAGGTGCTTGCATAGTTCCAGACCCTCCGACCACCTCTTCCTTGGGTTCTCGCTTGAATTCCAACTTTTTCAATCCAATAAGCGAGGAGGGAACTTCGTCTGGTCCGTCAGATTGTAACAGCGATGCTTATTTGTCTGCCGCCCGCCTTTCTGGTCCGAGATAG 2463 45.8 MKIHGLLYSITLGALATLLLPQLCSASILRTGNILPGFRGAQMTFFDRNGFFLYSNSSEFAFGFLAKQDATMFLLAVIHRNSSKAVWSANRDSPVSTSDEFVFDEKGNAFLERGGNVVWSTDTGDEGVSSLGLQDTGNLVLIGNDGGVIWQSFSHPTDTLLSNQEFSGGMRLTSDRGANNLTYFLEIKSGDMVLSVSFPTPQPYWSMRKESRKTVPEEDGVVSSASLVANSWRIYNKDKVLLWQFFFSTTNYTDSTSMAVLESNGMISFHYLPKGGSIIDSATKIPKDQCSLPVFCGAYFVCSTDSNCKCLSVLNPRSNCQTGIVSPCGSSKSNMQLEDAGNGLNYFALEFLQPFSKTDLDGCKSSCISNCSCLALFFQSSSESCFLLDRIGSFQGSTSGSDYVSYIKVLGEEKNSGDDRGDGNGKKHHTLVVVIAISTVFAVSCLLVFSYRYMKKKKKKLLSESQDGSSEDDKFFEGLTGMPIRFSFKDLQDATNNFSVKLGQGGFGSVYGGGLPDGTRLAVKKLEGIGQGKKQFRAEVSIIGSIHHLHLVRLKGFCAEGSHRLLAYEFMANGSLDKWIFRKKKQDFLLDWDRRFNIALGTAKGLAYLHQDCDATIIHCDIKPENVLLDENFLAKVSDFGLAKLMTREQSHVFTQMRGTRGYLAPEWIINYAISEKSDIYSYGLVLLEIIGGRKSYDPTEPPEKSHLPSYAFKMMEEGKLRDILDPNLAAEEWDERVSTAIKVALWCIQEDMAQRPAMAKVIQMLEGACIVPDPPTTSSLGSRLNSNFFNPISEEGTSSGPSDCNSDAYLSAARLSGPR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16010601 16013063 - Bpe009104.1 Bpe02g01248 99397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01248 820 Pfam Protein kinase domain 500 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01248 820 Gene3D - 48 155 IPR036426 -
Bpe02g01248 820 Gene3D Transferase(Phosphotransferase) domain 1 571 772 - -
Bpe02g01248 820 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Bpe02g01248 820 CDD B_lectin 49 156 IPR001480 -
Bpe02g01248 820 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 820 - -
Bpe02g01248 820 ProSiteProfiles PAN/Apple domain profile. 328 411 IPR003609 -
Bpe02g01248 820 SMART blect_4 44 156 IPR001480 -
Bpe02g01248 820 CDD PAN_AP_plant 355 409 - -
Bpe02g01248 820 PIRSF SRK 8 816 IPR024171 GO:0004674
Bpe02g01248 820 SMART serkin_6 496 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01248 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Bpe02g01248 820 SUPERFAMILY Protein kinase-like (PK-like) 479 767 IPR011009 -
Bpe02g01248 820 Pfam D-mannose binding lectin 86 166 IPR001480 -
Bpe02g01248 820 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 820 - -
Bpe02g01248 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 207 IPR036426 -
Bpe02g01248 820 Gene3D Phosphorylase Kinase; domain 1 457 570 - -
Bpe02g01248 820 ProSiteProfiles Protein kinase domain profile. 496 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01248 820 ProSiteProfiles Bulb-type lectin domain profile. 38 154 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01248 - - - jre:108985155 1087.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01248 Bpe14g00581 CCT
Bpe02g01248 Bpe14g00581 ECH
Bpe02g00561 Bpe02g01248 ECH
Bpe02g01248 Bpe02g00561 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01248 Bpe-Chr2:16010601 Bpe03g00164 Bpe-Chr3:2091579 4.60E-142 dispersed
Bpe09g00386 Bpe-Chr9:5063826 Bpe02g01248 Bpe-Chr2:16010601 5.85E-38 dispersed
Bpe10g00608 Bpe-Chr10:12940817 Bpe02g01248 Bpe-Chr2:16010601 0 wgd
Bpe14g00581 Bpe-Chr14:4897611 Bpe02g01248 Bpe-Chr2:16010601 0 wgd
Bpe02g00561 Bpe-Chr2:3616315 Bpe02g01248 Bpe-Chr2:16010601 1.73E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63182 PF00069 Pkinase 1.00E-48 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01248 Bpe_Chr02 FPKM 9.552052 10.810411 9.088547 9.596842 15.255739 15.902315 15.434919 12.010995 12.322654 13.116613