Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01256 ATGTCTCTCCACAACATCACCTACAAAACCCCCCCTCTCTCCCTCCCTCCTACCATTCAATTTCTCGCTCTCCCCAACGCTATGGACACACCGCAGAGGCGATACCGAGGCGTCAGGCAGAGGCATTGGGGCTCCTGGGTCTCCGAAATTCGCCATCCAATACTGAAGATTAGGATTTGGGTGGGGACGTTTCAAACGGCAGAAGATGCAGCCAGAGCCTACGACGAAGCAGCGAGGTTCATGTGCGGACCCAGGGCTCGAACCAACCTCCCTTACGACCCAAATGCTTCTTCCAAGCTTCTTGGTGCAACTTTGACAGCCAAGCTTCACCGCTGCTACATGGCTTCCCTGCAACTCAATAACCAGAAGATGCAGCCACTAGAAAAAGTCAAATCCACGAAACACAACCCCAGGGCTGCAGTGCCGGAGGGGAATGGGAAGGGGAAGAAATTGAAATTGGAACAGAGCGTTGAAGAGGAGGAGATAGAGCAAATGATAGAGGAGCTTCTAGATTATGGGTCTATGGAGCTTTGCATGTAA 540 52.04 MSLHNITYKTPPLSLPPTIQFLALPNAMDTPQRRYRGVRQRHWGSWVSEIRHPILKIRIWVGTFQTAEDAARAYDEAARFMCGPRARTNLPYDPNASSKLLGATLTAKLHRCYMASLQLNNQKMQPLEKVKSTKHNPRAAVPEGNGKGKKLKLEQSVEEEEIEQMIEELLDYGSMELCM 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16047004 16047634 + Bpe009112.1 Bpe02g01256 99405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01256 179 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Bpe02g01256 179 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Bpe02g01256 179 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Bpe02g01256 179 MobiDBLite consensus disorder prediction 129 152 - -
Bpe02g01256 179 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Bpe02g01256 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 148 178 - -
Bpe02g01256 179 CDD AP2 34 93 IPR001471 GO:0003700|GO:0006355
Bpe02g01256 179 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Bpe02g01256 179 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Bpe02g01256 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 28 136 - -
Bpe02g01256 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 148 178 - -
Bpe02g01256 179 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Bpe02g01256 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01256 Bpe-Chr2:16047004 Bpe02g02027 Bpe-Chr2:21876454 6.47E-31 dispersed
Bpe02g01256 Bpe-Chr2:16047004 Bpe06g00683 Bpe-Chr6:17434406 1.87E-52 wgd
Bpe02g01256 Bpe-Chr2:16047004 Bpe09g00436 Bpe-Chr9:11173869 3.16E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20957 PF00847 AP2 1.80E-11 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01256 - - twl:119993180 186.422