Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01262 ATGTCTGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGTGCCTCCAAGACCTACCCTCAGCAAGCGGGTACCATTCGTAAGAACGGTTACATCGTCATCAAGAACCGCCCCTGCAAGGTTGTCGAGGTTTCTACTTCAAAGACTGGGAAGCATGGTCATGCCAAGTGTCACTTTGTAGGGATTGATATTTTCACTGGAAAGAAACTTGAGGATATTGTTCCATCTTCCCACAATTGTGATGTTCCCCATGTTAATCGCACGGATTATCAACTGATTGACATATCTGAAGATGGATTTGTAAGTCTCTTAACTGACAATGGCAACACCAAGGATGACTTGAAGCTTCCCACGGATGACAGCTTACTCAGCCAGATTGCCCCAAAAAAATTAGTTGTCGGACGTATAATTAGCGTTGTTGGCTTTATATTGACTAAAAATTACGTATGTCGTCAGATTAAAGACGGATTTGCTGAAGGAAAGGACCTTGTGGTGTCGGTTATGTCAGCAATGGGGGAGGAACAAATCTGTGCTCTCAAGGACATTGGACCAAAGAACTAA 564 44.86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDDSLLSQIAPKKLVVGRIISVVGFILTKNYVCRQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16078949 16080700 + Bpe009118.2 Bpe02g01262 99411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01262 187 Gene3D - 144 185 IPR012340 -
Bpe02g01262 187 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 154 183 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe02g01262 187 TIGRFAM eIF_5A: translation elongation factor IF5A 17 121 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe02g01262 187 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 149 181 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe02g01262 187 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 128 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe02g01262 187 SMART eIF_5a_2 85 181 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe02g01262 187 Gene3D - 1 85 IPR014722 -
Bpe02g01262 187 PANTHER BNAA07G09420D PROTEIN 154 183 - -
Bpe02g01262 187 CDD S1_eIF5A 86 183 - -
Bpe02g01262 187 PIRSF Transl_init_eIF5A 139 184 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe02g01262 187 PIRSF Transl_init_eIF5A 1 148 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe02g01262 187 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Bpe02g01262 187 SUPERFAMILY Nucleic acid-binding proteins 148 183 IPR012340 -
Bpe02g01262 187 MobiDBLite consensus disorder prediction 1 21 - -
Bpe02g01262 187 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Bpe02g01262 187 SUPERFAMILY Nucleic acid-binding proteins 86 129 IPR012340 -
Bpe02g01262 187 Gene3D - 86 141 IPR012340 -
Bpe02g01262 187 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe02g01262 187 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g01262 Bpe14g00600 CCT
Bpe02g01262 Bpe04g00082 CCT
Bpe02g01262 Bpe02g00536 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01262 Bpe-Chr2:16078949 Bpe10g00890 Bpe-Chr10:14632518 4.74E-106 dispersed
Bpe14g00600 Bpe-Chr14:4994417 Bpe02g01262 Bpe-Chr2:16078949 1.01E-47 wgd
Bpe02g00536 Bpe-Chr2:3464645 Bpe02g01262 Bpe-Chr2:16078949 9.41E-107 wgd
Bpe02g01262 Bpe-Chr2:16078949 Bpe04g00082 Bpe-Chr4:630180 1.25E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01262 K03263 K02180 egr:104436092 308.531