Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01264 ATGGAAACCAGTCTTCTCATCAGAGCCCTGTCCTTCTTCTTCTTCTTCTTCTGCATAGGGTTTTCCGAAAGCAGAGAAATCATCGTTGGCGGAAAGTCTGACACATGGGCAATCCCCTCCTCCTCTCACTCCCAGGCTCTCAATGAATGGGCTCAATCCACTCGTTTTCGCGTCGGCGATTCTCTCGTGTGGAATTACGACGGACAAAAAGACTCCGTTCTGTTAGTATCCGAGGAAGATTACGCGTCCTGCAATGTATCAACCCCAATCGCAGAGTACAAGGACGGAAACACAAAGCTGAAGCTGGAGCGAGCAGGACCTTACTATTTCATCAGTGGAGCCAAGGGCCACTGCGAGCAGGGCCAGAAGGTGATCGTCGTGGTTCTTTCTCCGAGAAACCGCCACTTTTCATTTTCTCCGGCTCCTTCGCCCGCACAGTCAGAGGGTCCGGCCGTTGCTCCCTCCAGCCGTGGTTCCAATCTTCGGGGTGGTTTAGTAGTAGCAGTAATTGGACTTCTGGGTGTAGGTGCTATCATGGGTTGA 543 52.12 METSLLIRALSFFFFFFCIGFSESREIIVGGKSDTWAIPSSSHSQALNEWAQSTRFRVGDSLVWNYDGQKDSVLLVSEEDYASCNVSTPIAEYKDGNTKLKLERAGPYYFISGAKGHCEQGQKVIVVVLSPRNRHFSFSPAPSPAQSEGPAVAPSSRGSNLRGGLVVAVIGLLGVGAIMG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16085611 16086268 + Bpe009120.1 Bpe02g01264 99413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01264 180 Pfam Plastocyanin-like domain 41 122 IPR003245 GO:0009055
Bpe02g01264 180 Gene3D - 24 133 IPR008972 -
Bpe02g01264 180 PANTHER EARLY NODULIN-LIKE PROTEIN 3 8 172 - -
Bpe02g01264 180 SUPERFAMILY Cupredoxins 25 129 IPR008972 -
Bpe02g01264 180 MobiDBLite consensus disorder prediction 137 154 - -
Bpe02g01264 180 PANTHER BLUE COPPER PROTEIN 8 172 IPR039391 GO:0009055
Bpe02g01264 180 MobiDBLite consensus disorder prediction 137 159 - -
Bpe02g01264 180 ProSiteProfiles Phytocyanin domain profile. 25 130 IPR003245 GO:0009055
Bpe02g01264 180 CDD OsENODL1_like 25 129 IPR041846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01264 - - - csv:101210664 209.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01264 Bpe-Chr2:16085611 Bpe11g00459 Bpe-Chr11:3570473 1.48E-27 dispersed
Bpe11g00529 Bpe-Chr11:4096833 Bpe02g01264 Bpe-Chr2:16085611 8.88E-17 dispersed
Bpe02g01264 Bpe-Chr2:16085611 Bpe10g00662 Bpe-Chr10:13208226 3.65E-28 transposed
Bpe02g01264 Bpe-Chr2:16085611 Bpe08g01005 Bpe-Chr8:12384876 4.45E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g00893 . 390 531 Phytocyanin Superfamily AT1G64640 57.2 6.0e-39 157.5
Bpe02g01264 . 12 178 Phytocyanin Superfamily AT5G25090 51.1 2.6e-39 158.7
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01264 Bpe_Chr02 FPKM 0.827225 0.760591 1.326044 0.0 3.39112 4.30097 3.066453 0.0 0.0 0.0