Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01269 ATGGCAGACGTGGCGCTGACGGGGGAGATTGAAGCCACCGCCGCTCGGCTCGGAATCGATCTCTCCCAAATCGATCTTGACTCCATTCGCCTCCCTCCTGGTGAAGACTTCGGCATCATTAGTGATGATGAGGATGTTTTGCAAGAGGAGAATCTGGAGTTCGATACTGGATTTGGAAACATTATTGTTGTGGATAATCTTCCTGTTGTTCCCCGTGAAAAATTTGAGAAGCTTGAAGGGGTAATTCGCAAGATATACAGTCAAATTGGAATAATCAAGGAGGATGGTCTTTGGATGCCAGTTGATCCTGAGACACAAAAAACTTTAGGTTACTGCTTCATCGAGTACAATACCCCCCAGGAAGCTGAACTTGCCAAGGAGAAAACAAATGGATACAAACTCGACAGAGCACACATATTTGCTGTTAGCATGTTTGAAGATTTCGATAAATTCATGAAGGTTCCTGATGAGTGGGTTACTCCTGAAAGCATTTCATACTCTCCGGGGGAGAATCTTCAAAGTTGGTTGACAGATGAGAAAGCTCGTGATCAGTTTGTGATTCGTGCTGGTAATGATACTGAAGTTTTATGGAATGATGCTAGACATATGAAGCCAGACCCTGTGTACAAGCGTACATTTTGGACTGAAGGTTTTGTCCAATGGTCATCTTTTGGGACTTACTTGGCAACAGTTCACCGCCAAGGTGCTGCTGTTTGGGGTGGTGCCAGCACATTTAATCGCTTAATGCGTTATGCTCATTCTCTGGTTAAACTGATTGACTTTTCACCTGGTGAGAAATATTTAGTAACTTACAGTTGTCATGAACCAAGCAATCCTAGAGATGCTAATAGGATTGTGATCAACATATTTGATGTTAGAACTGGTAAAGTAATGCGGGATTTCAAGGGAAGTCCTGATGAATTTGCTGTTGGAGGAACAGGAGCTGTCACAGGAGTTTCTTGGCCAGTTTTCAGATGGGGTGGAAAGAATGATAAATATTTTGCCAGGATTGGAAAAAATATAATCTCCGTCTATGAAACAGAAACTTTTTCACTGGTTGACAAGAAGTCTTTGAAGGTTGACAATGTCGTGGATTTTAGTTGGTCTCCAACTGATCCAATTCTTGCACTTTTTGTTCCCGAGCTAGGTGGCGGCAACCAACCTGCTAGGGTTAGCCTTGTCCAAATTCCTAGCAAAGAAGAAATTAGGCAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTATTGGCAAAGCAATGGAGATTATCTTGCTGTGAAGGTTGATCGTTATACAAAGACCAAAAAGAGCACATACACTGGATTTGAGCTTTTCCGCATCAAAGAACGTGACATTCCAATTGAGGTTTTAGAACTTGAAAACAAGAATGATAAAATTATTGCTTTTGCTTGGGAGCCCAAGGGCCACAGATTTGCTGTTATTCATGGTGATAACCCCAGGCCAGACATAAGTTTTTACTCAATGCGAACTGCTCACAATACTGGTCGAGTTTCGAAGCTCACCACTCTCAAAGGGAAACAAGCAAATGCTCTTTTCTGGTCACCAGCTGGGCGTTTTATTATTCTTGCTGGACTAAAGGGTTTCAACGGACAGCTTGAGTTTTATAATGTTGATGAGCTTGAAACCATGGCTACAGCTGAGCATTTCATGGCGACAGACATTGAATGGGATCCCACTGGAAGGTGGTATGTTGCAACTTCTGTGACATCTGTTCATGAGATGGAAAATGGTTTCAACATATGGTCTTTTAATGGAAAACTACTGTATAGAATATTGAAGGATCATTTCTATCAGTTCTCGTGGCGGCCAAGGCCACCATCGGTGTTATCACCTGAGAAAGAGGAGGAGATAGCTAAGAACTTGAAGAAGTACAGTAAGAAGTACGAAGCAGAAGACCAAGACGTGTCAATGCTATTAAGTGAGCAGGATCGGGAGAAACGGAAGAAGTTGAAGGATGAATGGGATAAATGGGTGGCCGAGTGGAGAAGGTTGCATGAAGAAGAAAAACTGTGGAGGCAGAAACTGAGGGATGGTGAAGCGAGTGATGAAGAAGAAGAATACGAAGCCAAAGAGGTTGAAGTTGAGGAGATTCTTGATGTTGTGGAGGAGGTTGTCGATCTTGAAGAGTAA 2151 42.49 MADVALTGEIEATAARLGIDLSQIDLDSIRLPPGEDFGIISDDEDVLQEENLEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYSQIGIIKEDGLWMPVDPETQKTLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVSMFEDFDKFMKVPDEWVTPESISYSPGENLQSWLTDEKARDQFVIRAGNDTEVLWNDARHMKPDPVYKRTFWTEGFVQWSSFGTYLATVHRQGAAVWGGASTFNRLMRYAHSLVKLIDFSPGEKYLVTYSCHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDEFAVGGTGAVTGVSWPVFRWGGKNDKYFARIGKNIISVYETETFSLVDKKSLKVDNVVDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEEIRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRTAHNTGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRWYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFYQFSWRPRPPSVLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKKLKDEWDKWVAEWRRLHEEEKLWRQKLRDGEASDEEEEYEAKEVEVEEILDVVEEVVDLEE 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16115050 16119101 + Bpe009125.1 Bpe02g01269 99418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01269 716 Gene3D - 59 143 IPR012677 -
Bpe02g01269 716 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bpe02g01269 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Bpe02g01269 716 PIRSF Transl_init_eIF3b 6 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bpe02g01269 716 Gene3D - 453 622 IPR011042 -
Bpe02g01269 716 Gene3D - 163 426 IPR015943 GO:0005515
Bpe02g01269 716 PANTHER BNACNNG51870D PROTEIN 8 713 - -
Bpe02g01269 716 SUPERFAMILY RNA-binding domain, RBD 59 139 IPR035979 GO:0003676
Bpe02g01269 716 Pfam Eukaryotic translation initiation factor eIF2A 405 606 IPR013979 -
Bpe02g01269 716 CDD RRM_eIF3B 59 142 IPR034363 -
Bpe02g01269 716 Coils Coil 687 707 - -
Bpe02g01269 716 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bpe02g01269 716 SMART rrm1_1 61 142 IPR000504 GO:0003723
Bpe02g01269 716 SUPERFAMILY DPP6 N-terminal domain-like 219 599 - -
Bpe02g01269 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01269 Bpe-Chr2:16115050 Bpe02g01672 Bpe-Chr2:19368045 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01269 K03253 - csv:101213144 1276.92