Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01272 ATGGAGTTCAAGCTGTGCGACTCCTGCAAGGCGGCTAGGCCGACTCTCTTTTGCCGCGCCGACTCCGCCTTTCTGTGCGTGGCATGTGACTCTGAAATCCACGCTGCCAACAAGCTTGCCTCTCGCCACGCTCGTGTTTGGCTCTGCGAAGGCTGCGAGCAAGCACCCGCTCATGTCACCTGCAAGGCCGATGCAGCTTCTCTCTGCATCAGTTGCGACCGCGACATCCACTCTGCCAACCCCCTGGCTAGTCGTCACGACCGAATTCCCGTGACGCCCTTCTTTAACACCCCCGATTCGCGACCAACCAAATCGGTCTCCGCTGTCAACTTTCTCGACGACAGTTACTTCTCCGACGTCGACGGAGATGCCGACGTCAGCAGGGAAGAGGCCGAGGCAGCTTCGTGGCTGCTCCCCAATCCCCATCCCAAAGATATCGGAAGCCCGGAACTTATCTCGAGCCATCAAGTGTATCGGGAAACGTTTCCGTTTGTCGACCTTAATTACGGATCGATTAATCCGAAATCGGAAGCACAGGAGTTTAACAACTCGGGTGCGGATGGAGTAGTTCCCATTCAAGCCAAGGGTATCCAGAAACCTAACTGCGACGGCTTGGTGGCCTATGGCTTTGACCGTCATTGTCTGAGTCAGAGCGTATCGTCATCCTCGCACGAAGTCGGAGTGGTTCCTGATGGCAGCGCAGTAGCCGAAACGTCAAACCCCAGCATAAAGCCGCATGCGATCAACACAACAACAGTGCAAGTTTCGGGGGCGGATAGGGAAGCGAGGGTGATGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACAATCCGGTATGCATCTCGAAAGGCCTACGCAGAGACAAGACCACGGATCAAAGGGAGGTTTGCCAAGCGCACCGAAGCGGATATGGACGCCGGATACGGGGTTGTGCCGGCAGTTGTTCTGAGGAAATATTATTAG 972 55.25 MEFKLCDSCKAARPTLFCRADSAFLCVACDSEIHAANKLASRHARVWLCEGCEQAPAHVTCKADAASLCISCDRDIHSANPLASRHDRIPVTPFFNTPDSRPTKSVSAVNFLDDSYFSDVDGDADVSREEAEAASWLLPNPHPKDIGSPELISSHQVYRETFPFVDLNYGSINPKSEAQEFNNSGADGVVPIQAKGIQKPNCDGLVAYGFDRHCLSQSVSSSSHEVGVVPDGSAVAETSNPSIKPHAINTTTVQVSGADREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEADMDAGYGVVPAVVLRKYY 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16126093 16127207 - Bpe009128.1 Bpe02g01272 99421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01272 323 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 4 315 - -
Bpe02g01272 323 Pfam CCT motif 260 302 IPR010402 GO:0005515
Bpe02g01272 323 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Bpe02g01272 323 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Bpe02g01272 323 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Bpe02g01272 323 CDD Bbox1_BBX-like 5 48 - -
Bpe02g01272 323 SMART bboxneu5 1 48 IPR000315 GO:0008270
Bpe02g01272 323 SMART bboxneu5 49 91 IPR000315 GO:0008270
Bpe02g01272 323 ProSiteProfiles CCT domain profile. 260 302 IPR010402 GO:0005515
Bpe02g01272 323 CDD Bbox1_BBX-like 48 91 - -
Bpe02g01272 323 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 315 IPR045281 GO:0009909
Bpe02g01272 323 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01272 Bpe-Chr2:16126093 Bpe13g01202 Bpe-Chr13:17372137 2.50E-86 dispersed
Bpe15g00540 Bpe-Chr15:16526178 Bpe02g01272 Bpe-Chr2:16126093 6.28E-08 dispersed
Bpe14g00128 Bpe-Chr14:1750730 Bpe02g01272 Bpe-Chr2:16126093 9.41E-76 transposed
Bpe14g00609 Bpe-Chr14:5066990 Bpe02g01272 Bpe-Chr2:16126093 2.59E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20959 PF00643 zf-B_box 8.80E-06 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01272 - - tcc:18587662 426.787