Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01272 ATGGAGTTCAAGCTGTGCGACTCCTGCAAGGCGGCTAGGCCGACTCTCTTTTGCCGCGCCGACTCCGCCTTTCTGTGCGTGGCATGTGACTCTGAAATCCACGCTGCCAACAAGCTTGCCTCTCGCCACGCTCGTGTTTGGCTCTGCGAAGGCTGCGAGCAAGCACCCGCTCATGTCACCTGCAAGGCCGATGCAGCTTCTCTCTGCATCAGTTGCGACCGCGACATCCACTCTGCCAACCCCCTGGCTAGTCGTCACGACCGAATTCCCGTGACGCCCTTCTTTAACACCCCCGATTCGCGACCAACCAAATCGGTCTCCGCTGTCAACTTTCTCGACGACAGTTACTTCTCCGACGTCGACGGAGATGCCGACGTCAGCAGGGAAGAGGCCGAGGCAGCTTCGTGGCTGCTCCCCAATCCCCATCCCAAAGATATCGGAAGCCCGGAACTTATCTCGAGCCATCAAGTGTATCGGGAAACGTTTCCGTTTGTCGACCTTAATTACGGATCGATTAATCCGAAATCGGAAGCACAGGAGTTTAACAACTCGGGTGCGGATGGAGTAGTTCCCATTCAAGCCAAGGGTATCCAGAAACCTAACTGCGACGGCTTGGTGGCCTATGGCTTTGACCGTCATTGTCTGAGTCAGAGCGTATCGTCATCCTCGCACGAAGTCGGAGTGGTTCCTGATGGCAGCGCAGTAGCCGAAACGTCAAACCCCAGCATAAAGCCGCATGCGATCAACACAACAACAGTGCAAGTTTCGGGGGCGGATAGGGAAGCGAGGGTGATGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACAATCCGGTATGCATCTCGAAAGGCCTACGCAGAGACAAGACCACGGATCAAAGGGAGGTTTGCCAAGCGCACCGAAGCGGATATGGACGCCGGATACGGGGTTGTGCCGGCAGTTGTTCTGAGGAAATATTATTAG 972 55.25 MEFKLCDSCKAARPTLFCRADSAFLCVACDSEIHAANKLASRHARVWLCEGCEQAPAHVTCKADAASLCISCDRDIHSANPLASRHDRIPVTPFFNTPDSRPTKSVSAVNFLDDSYFSDVDGDADVSREEAEAASWLLPNPHPKDIGSPELISSHQVYRETFPFVDLNYGSINPKSEAQEFNNSGADGVVPIQAKGIQKPNCDGLVAYGFDRHCLSQSVSSSSHEVGVVPDGSAVAETSNPSIKPHAINTTTVQVSGADREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEADMDAGYGVVPAVVLRKYY 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16126093 16127207 - Bpe009128.1 Bpe02g01272 99421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01272 323 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 4 315 - -
Bpe02g01272 323 Pfam CCT motif 260 302 IPR010402 GO:0005515
Bpe02g01272 323 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Bpe02g01272 323 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Bpe02g01272 323 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Bpe02g01272 323 CDD Bbox1_BBX-like 5 48 - -
Bpe02g01272 323 SMART bboxneu5 1 48 IPR000315 GO:0008270
Bpe02g01272 323 SMART bboxneu5 49 91 IPR000315 GO:0008270
Bpe02g01272 323 ProSiteProfiles CCT domain profile. 260 302 IPR010402 GO:0005515
Bpe02g01272 323 CDD Bbox1_BBX-like 48 91 - -
Bpe02g01272 323 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 315 IPR045281 GO:0009909
Bpe02g01272 323 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01272 - - - tcc:18587662 426.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01272 Bpe-Chr2:16126093 Bpe13g01202 Bpe-Chr13:17372137 2.50E-86 dispersed
Bpe15g00540 Bpe-Chr15:16526178 Bpe02g01272 Bpe-Chr2:16126093 6.28E-08 dispersed
Bpe14g00128 Bpe-Chr14:1750730 Bpe02g01272 Bpe-Chr2:16126093 9.41E-76 transposed
Bpe14g00609 Bpe-Chr14:5066990 Bpe02g01272 Bpe-Chr2:16126093 2.59E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00128 . 23 396 C2C2-CO-like Transcription Factor Family AT5G15850 51.5 2.2e-58 223.0
Bpe14g00128 . 25 396 C2C2-CO-like Transcription Factor Family AT3G02380 53.7 8.9e-65 244.2
Bpe02g01272 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 53.4 5.1e-63 238.4
Bpe13g01202 BCT 4 347 C2C2-CO-like Transcription Factor Family AT5G57660 54.4 1.4e-65 246.9
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 6.1e-80 294.7
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 51.5 7.5e-78 287.7
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 51.5 7.5e-78 287.7
Bpe07g00449 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 55.8 3.7e-52 202.2
Bpe15g00849 BCT 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 8.2e-52 201.1
Bpe05g00323 BCT 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 1.5e-50 196.8
Bpe13g00423 . 1 113 C2C2-CO-like Transcription Factor Family AT2G21320 80.5 1.5e-49 192.6
Bpe13g00423 . 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 81.7 7.3e-50 193.7
Bpe05g00323 BCT 1 190 C2C2-CO-like Transcription Factor Family AT4G39070 56.5 7.6e-55 210.7
Bpe07g00449 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 57.5 6.4e-54 207.6
Bpe15g00849 BCT 1 181 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 7.1e-53 204.1
Bpe05g00126 BCT,CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.9 1.8e-48 189.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20959 PF00643 zf-B_box 8.80E-06 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01272 Bpe_Chr02 FPKM 10.400685 10.691241 9.585592 10.046176 9.192948 8.553651 9.052172 8.297557 8.03003 7.927404