Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01375 ATGGCGTCTAACCCTCTCGAAATCTGCGTCAAGGCCTCCGTCACTGTGCCCAATAAGCTCGGTGATTGTCCCTTCTGCCAAAGGGTACTGCTAACCTTGGAGGAAAAACATTTACCTTACGACATGAAGTTGGTAGATTTGACTAACAAGCCAGAATGGTTCCTAGAAATTAATGCAGATGGAAAAGTTCCCGTCATCAAACTCGAAGAAAAGTGGATTGCAGATTCAGATGTTATAACCCAATCGCTCGAAGAGAAATACCCAAATCCACCATTGGCTACTCCACCTGCAAAGTCATCAATTGGGTCAAAGATCTTTTCCACCTTTATTGGTTTTCTCAAAAGCAAAGACTCCGCCGATGGAACAGAACAAGCTTTGCTAAGTGAGCTAAGTTCCTTCAATGATTATATCAAAGAGAATGGTCCTTTCATAAACGGCCAAGAGGTATCAGCTGCAGACTTGTCTCTTGGACCGAAGTTGTATCATCTCGAAATTGCATTAGCACACTATAAGAATTGGTCGATTCCGGACACCCTACCTTATGTGAAGTCTTATACGAAGGAACTATTTTTAAAGGAATCATTTGTGAAAACTCGAGCTCTTCCCGAGGATGTCATTGCCGGCTGGCGGCCAAAAGTATTTGGTTGA 648 43.06 MASNPLEICVKASVTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLEINADGKVPVIKLEEKWIADSDVITQSLEEKYPNPPLATPPAKSSIGSKIFSTFIGFLKSKDSADGTEQALLSELSSFNDYIKENGPFINGQEVSAADLSLGPKLYHLEIALAHYKNWSIPDTLPYVKSYTKELFLKESFVKTRALPEDVIAGWRPKVFG 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17341156 17343869 - Bpe009231.1 Bpe02g01375 99524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01375 215 CDD GST_N_family 23 84 - -
Bpe02g01375 215 Pfam Glutathione S-transferase, N-terminal domain 22 91 IPR004045 -
Bpe02g01375 215 Gene3D Glutaredoxin 5 92 - -
Bpe02g01375 215 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 3 214 IPR044627 GO:0033355|GO:0045174|GO:0098869
Bpe02g01375 215 SUPERFAMILY Thioredoxin-like 21 90 IPR036249 -
Bpe02g01375 215 Gene3D - 93 214 - -
Bpe02g01375 215 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 13 91 IPR004045 -
Bpe02g01375 215 SFLD Glutathione Transferase (cytosolic) 22 188 IPR040079 -
Bpe02g01375 215 SFLD Main (cytGST) 22 188 - -
Bpe02g01375 215 SUPERFAMILY GST C-terminal domain-like 86 213 IPR036282 -
Bpe02g01375 215 PANTHER GLUTATHIONE S-TRANSFERASE DHAR3, CHLOROPLASTIC 3 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01375 K21888 DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18] - csv:101203335 379.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01375 Bpe-Chr2:17341156 Bpe04g01694 Bpe-Chr4:22873085 8.82E-77 dispersed
Bpe02g01375 Bpe-Chr2:17341156 Bpe15g01095 Bpe-Chr15:20129788 6.00E-86 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00515 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 5.1e-63 237.7
Bpe06g00513 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 9.6e-62 233.4
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 2.3e-63 238.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.4 3.3e-62 235.0
Bpe06g00513 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 5.4e-59 224.6
Bpe06g00515 . 5 206 Glutathione S-transferase Gene Family AT1G02950 55.2 9.1e-59 223.8
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 8.8e-60 226.9
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.0e-59 225.7
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.8 2.3e-60 228.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 4.0e-60 228.0
Bpe06g00513 . 1 213 Glutathione S-transferase Gene Family AT2G47730 58.9 1.9e-67 252.7
Bpe06g00515 . 1 213 Glutathione S-transferase Gene Family AT2G47730 57.9 1.2e-66 250.0
Bpe11g01239 . 1 212 Glutathione S-transferase Gene Family AT3G03190 58.5 6.7e-71 263.8
Bpe11g01239 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.3 7.1e-73 270.4
Bpe02g00874 . 3 216 Glutathione S-transferase Gene Family AT3G09270 57.2 9.1e-71 263.5
Bpe12g00457 . 3 226 Glutathione S-transferase Gene Family AT1G74590 50.4 1.6e-65 246.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.9 1.0e-90 329.7
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G78380 64.7 1.2e-83 306.2
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78380 64.4 4.6e-83 304.3
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78370 63.1 2.7e-80 295.0
Bpe09g00277 . 1 218 Glutathione S-transferase Gene Family AT1G78370 61.9 1.0e-79 293.1
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78370 61.2 3.4e-78 288.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.8 4.9e-85 310.8
Bpe09g00277 . 1 217 Glutathione S-transferase Gene Family AT1G78340 63.6 1.5e-81 299.3
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78340 59.7 3.4e-78 288.1
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78320 53.7 1.9e-61 232.3
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78320 52.3 1.5e-58 222.6
Bpe09g00277 . 1 211 Glutathione S-transferase Gene Family AT1G78320 51.2 3.2e-56 214.9
Bpe09g00278 . 1 219 Glutathione S-transferase Gene Family AT1G17180 64.4 1.8e-87 318.9
Bpe03g00861 . 2 220 Glutathione S-transferase Gene Family AT1G17180 63.0 1.2e-83 306.2
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G17180 61.9 8.7e-82 300.1
Bpe09g00278 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.6 3.2e-76 281.6
Bpe03g00861 . 4 218 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00277 . 3 215 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00278 . 3 214 Glutathione S-transferase Gene Family AT3G43800 53.7 1.3e-64 243.0
Bpe09g00277 . 3 217 Glutathione S-transferase Gene Family AT3G43800 52.5 1.4e-63 239.6
Bpe03g00861 . 4 215 Glutathione S-transferase Gene Family AT3G43800 50.5 2.1e-59 225.7
Bpe09g00278 . 4 219 Glutathione S-transferase Gene Family AT1G53680 59.2 2.4e-71 265.4
Bpe09g00277 . 4 217 Glutathione S-transferase Gene Family AT1G53680 58.1 2.3e-69 258.8
Bpe03g00861 . 6 220 Glutathione S-transferase Gene Family AT1G53680 54.8 5.0e-69 257.7
Bpe11g01706 . 60 231 Glutathione S-transferase Gene Family AT2G02390 57.0 8.4e-57 216.9
Bpe13g00917 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.9 4.9e-49 191.0
Bpe11g01706 . 18 230 Glutathione S-transferase Gene Family AT2G02380 60.1 3.7e-72 268.1
Bpe13g00917 . 15 223 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-61 233.4
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41210 67.2 2.6e-95 345.1
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41240 67.2 4.5e-93 339.0
Bpe04g01862 . 8 223 Glutathione S-transferase Gene Family AT5G02780 63.8 1.8e-77 285.8
Bpe04g01862 . 6 225 Glutathione S-transferase Gene Family AT3G55040 67.0 7.9e-83 303.9
Bpe04g01862 . 2 227 Glutathione S-transferase Gene Family AT5G02790 63.4 2.4e-82 302.0
Bpe15g01095 . 1 211 Glutathione S-transferase Gene Family AT1G19570 66.0 1.7e-82 302.4
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G19570 57.7 9.6e-78 286.6
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G19570 58.9 8.7e-71 263.5
Bpe15g01095 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.0 3.3e-86 314.7
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G75270 64.5 3.4e-83 304.7
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G75270 58.9 7.9e-72 266.9
Bpe02g01375 . 2 215 Glutathione S-transferase Gene Family AT5G16710 75.7 8.3e-100 360.1
Bpe04g01694 . 3 232 Glutathione S-transferase Gene Family AT5G16710 54.3 2.6e-69 258.8
Bpe15g01095 . 3 210 Glutathione S-transferase Gene Family AT5G16710 56.7 4.4e-69 258.1
Bpe02g00628 . 1 268 Glutathione S-transferase Gene Family AT1G77290 66.5 2.4e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010539 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01375 Bpe_Chr02 FPKM 14.340996 14.880569 2.459031 2.081961 3.157237 3.121413 3.834326 0.433722 0.450247 0.068173