Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01429 ATGGGGAGAGGAAGAGTTGAACTGAAGAGGATAGAAAACAAGATAAACAGGCAGGTTACGTTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAATAGCATGCTTAAAACCCTGGAAAGGTACCAAAAATGCAGCTATGGTGCTGTGGAAGTCAACAGACCATGCAAGGAACTTGAGCAGAGCAGCTACAGAGAGTATTTGAAGTTAAAATCCAGATTTGAGTCCCTACAGAGAACTCAAAGAAATCTGCTAGGAGAAGAATTGGGTCCATTGAACTCGAAAGAGCTTGAACAGCTTGAGCATCAGCTGGAGGCATCCTTAACGCAAGTCAGATCCACCAAGACCCAGTACATGCTTGATCAGCTCTCTGATCTTCAAATCAAGGAACAAATGCTGATTGAAGCTAACAGAGCTTTGACTATAAAGCTCGATGAAATCAGCTCGAGAAATCACCTCAGGCAAGCTTGGGAAGCTGGGGAGCAAAACATATCATATGGCCCGCAGAATGCTCAAACTCAAGGATTCTTCCAGCCTCTGGACTGCAATCCTACTTTGCAGATTGGATACAGTGGAGCTGATGAGATGGCTGCAGCTGGATCAGCTCACGGCCAGCAAGTCACTGGATTCATACCTGGATGGATGCTTTGA 738 45.12 MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNSMLKTLERYQKCSYGAVEVNRPCKELEQSSYREYLKLKSRFESLQRTQRNLLGEELGPLNSKELEQLEHQLEASLTQVRSTKTQYMLDQLSDLQIKEQMLIEANRALTIKLDEISSRNHLRQAWEAGEQNISYGPQNAQTQGFFQPLDCNPTLQIGYSGADEMAAAGSAHGQQVTGFIPGWML 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17710173 17714224 - Bpe009284.1 Bpe02g01429 99578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01429 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe02g01429 245 Coils Coil 126 146 - -
Bpe02g01429 245 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g01429 245 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bpe02g01429 245 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Bpe02g01429 245 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g01429 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe02g01429 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe02g01429 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe02g01429 245 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bpe02g01429 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Bpe02g01429 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe02g01429 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe02g01429 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe02g01429 245 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01429 Bpe-Chr2:17710173 Bpe13g00816 Bpe-Chr13:14457272 2.35E-103 dispersed
Bpe14g00138 Bpe-Chr14:1858128 Bpe02g01429 Bpe-Chr2:17710173 9.60E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20974 PF01486 K-box 4.40E-26 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01429 K09264 - jre:108989428 405.216