Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01443 CCCCAAGAGAAGGAGCTTTTTTTTCTTTCAAAGAGCTTGGGGAAGATAGCAATGGAGTTTCTGTTCAGAAAGTCGACGCCGACCATGGTGGCGATTGCGGCGGTTTTGTGTGTTTTAGGAATGATGGTGCCAGAAGTTTCAGGCACTCGGTGGACTGTAGGGAGTAACAAGGGTTGGACCACCGGTGTTAACTACACCATTTGGGCTCAAGATAAGCACTTCTACAATGGCGACTGGCTCTTCTTTGTTTACGACCGGAATCAAAATAACGTTCTAGAGGTGAACGAAACGGACTACGAGACCTGCAATTCCGATCACCCGATCCATAGCTGGACAACAGGTGCCGGAAGAGACGTCGTCCCGCTCAACGTGACGAGGCCCTACTATTTCATAAGCGGCAAAGGTTTCTGCTATGGAGGTATGAAGCTAGCTATTAATGTTGAGAATTTACCTCCTCCTCCATCATCTTTGCCATTAAATGAGACGAACTCTGCTCCGACACTAACTTACAGATTGACCCGTCTTGTTCTAGCCGTCGGAGTCGTCTGGGAAGCTCTTTCCCGGCTCTGA 570 48.77 PQEKELFFLSKSLGKIAMEFLFRKSTPTMVAIAAVLCVLGMMVPEVSGTRWTVGSNKGWTTGVNYTIWAQDKHFYNGDWLFFVYDRNQNNVLEVNETDYETCNSDHPIHSWTTGAGRDVVPLNVTRPYYFISGKGFCYGGMKLAINVENLPPPPSSLPLNETNSAPTLTYRLTRLVLAVGVVWEALSRL 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17834531 17835601 + Bpe009298.1 Bpe02g01443 99592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01443 189 SUPERFAMILY Cupredoxins 48 147 IPR008972 -
Bpe02g01443 189 ProSiteProfiles Phytocyanin domain profile. 49 149 IPR003245 GO:0009055
Bpe02g01443 189 PANTHER BLUE COPPER PROTEIN 28 178 IPR039391 GO:0009055
Bpe02g01443 189 Pfam Plastocyanin-like domain 59 141 IPR003245 GO:0009055
Bpe02g01443 189 Gene3D - 48 150 IPR008972 -
Bpe02g01443 189 PANTHER LAMIN-LIKE PROTEIN 28 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01443 - - - zju:107415900 243.817
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01443 Bpe14g00162 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01443 Bpe-Chr2:17834531 Bpe14g00163 Bpe-Chr14:2042050 1.82E-29 dispersed
Bpe02g00419 Bpe-Chr2:2742580 Bpe02g01443 Bpe-Chr2:17834531 2.15E-09 transposed
Bpe14g00162 Bpe-Chr14:2039975 Bpe02g01443 Bpe-Chr2:17834531 1.67E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1593 . . Bda01g01224 . Bpe02g01443 Bpe14g00162 . . . Cmo11g01201 . . Car11g00976 Car14g00951 . . . . . . . . . . Cla10g01479 Cam10g1524 Cec10g1562 Cco10g1540 Clacu10g1537 Cmu10g2301 Cre10g1684 . . . Cone16ag0481 . . . . Blo17g00375 Blo18g00400 . . . . . . . . . . . . . Cpe04g00182 . . . . . . . . . . . . . . . . Csa03g03793 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g00893 . 390 531 Phytocyanin Superfamily AT1G64640 57.2 6.0e-39 157.5
Bpe02g01264 . 12 178 Phytocyanin Superfamily AT5G25090 51.1 2.6e-39 158.7
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01443 Bpe_Chr02 FPKM 34.626656 39.092476 23.462564 22.02643 51.856998 53.759338 48.27911 11.48202 11.038729 10.419541