Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01492 ATGGCTGCGCTGCCACTTCTCCGTTATGGATCTGTTGATCGCTCCTCCTTATTCTACTCCAATGATTTATCTTCCTCGTTCTGGGGACGAGATTTGTGTCTCGGCTCCAGGTGTAGTTCCAGAGTTAATGTTCAGTATAATGGGAGTTTCCCCAGGGTTTTCGCCATGTCAAATGGCGCACCGTCTCCTTTCAAGATGAACCTCAATGAGTACATGGTTACTCTTGAAAAACCTCTCGGTATTCGCTTCGCTCTTTCCATCGACGGAAAAATATTCGTTCACGCTCTTAAAAGAGGGGGTAATGCTGAGAAGTCAAGGATAATCATGGTGGGAGACACATTGAAGAATGCTAGCGAATCGTCTGGTGGCAAGATCATACAGATCAATGACTTAAGTGATACCCAGAAGATGCTGAAGGAGAAATCAGGATCTTTTAGTCTGATTCTTGAAAGACCCTTTTCTACTTTTCCAATTCAACAGCTTCTATTTAGTGATTTTGACATATTATTCAATAGAGGTCGAGTCCCTATTGCTTCATGGAACAAGAATGTTATAGCACGGGCAACTACCGACAGTGATGGCAATTCTGGGTTTGCTGTGTTTTCCTCAAAGTTTTCAACATTGCAAGGGTGGAATATTTTGAACCAAAACGAGGCTATAAAACCACAAAAGCAGAAGAATTCTCTCTTACCTCCCATAAAACAACTGATCAGTATCTTTTCAGAAGAGGAATCTGGGGATGGAGAGTGGGGTCATGGGAGTTTCCCATTAGAGGAGTATACTAAAGCACTGGATCGGTCGAAAGGCGAACAATACTACAATCACTTTCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTGGGGTCATGCATACAAACTGAAGCTGATGTGCAGACTTTGGCAAAGATGGGGGTTACTGCTGTTTTGAATTTCCAAAGTGGAATTGATGCAGAAAATTGGGGTATCAATTCTAAGTTAATTAATGAGTCATGTCAAAGATTGGATATCCTAATGGTCAATTATCCAATAAGGGAAGGTAATTCTTATGACTTAAGGAAGAAGCTACCGTTTTGTGTGGGGTTACTATTACGCTTGTTAAAGAAGAGCCACCGTGTTTTTATTACGTGTACTACTGGTTTTGATCGATCTCCATCCTGTGTGATTGCATACCTGCATTGGATGACTGATACTTCCCTTCAGGCAGCATATAATTTTGTTACCAGTTTGCATATATGCAAGCCAGACAGGCCAGCTATTGCTTGGGCTACATGGGATCTCATAGCTCTGGTGGAAAATGGTGGGCACGATGGACCAGCGACACATGCCGTGACCTTTGTGTGGAATGGACAAGAGGGAGAGGAAGTTATTTTGGTTGGAGATTTTACTGGAAATTGGAAGGAACCAGTGAGGGCAACCCACAAGGGAGGGCCAAGATATGAGGTGGAATTGAGGCTTTCACAAGGAAAGTACAACTACAAGTATATAGTAAACGGTCAATGGCGGCATTCAACATCATCACCGGCAGAGAGGGACGAGTGGGGGAACGTCAATAACGTGATTGAAATAGGCGATACTGCCAGTGTTCGACCTGCCAATCAACAGCACAAGAAAAACAACGGTCACTTAGCCAATAAAATTCTCTTTTTTCTGATAAAATCTGCCATTTTTATCAATAACCATAATGCCATAAACTCAGAATATGCCTTCATTTCGCTGTTCTTGCAGTTTATGGTGTTCGCTTGTTCAGACTCGAGGGTCTGCCCTTCTCATGTTTTGAATTTCCAACCCGGGGAGGCTTTTGTCGTTAGAAACGTGGCTAATATTGTTCCTCCCTTCAATAAGCTCAAATACTCAGGACCTGGATCCGCCATTGAATACGCTGTTTTACACCTTAAGGTAGAACAAATTGTGGTGATTGGGCATAGTGCTTGTGGAGGAATCAAGGGGCTGTTGAGCTTCCCAGATGAAGGACCAACATCTACTGACTTCATAGAGGATTGGGTGAAGGTAGTGACACCTGCGAAGAAGAAAGTGCTGGGAAAACATCCCGATGCTCAATTCTCCGAATTATGCGGCCACTGCGAAAGGGAGGCTGTCAATGTTTCCATTGGGCATTTGCTGACCTATCCATTTGTCAGAGATGGCGTCCTGAATAAAACTCTAGCCCTCAAGGGTGGTTACTATGACTTCGTTAAAGGGAGCTTTGAGCTATGGAGTCTTGAATATGGCCTTTCTTCTCCTCTCCACGTATGA 2262 43.28 MAALPLLRYGSVDRSSLFYSNDLSSSFWGRDLCLGSRCSSRVNVQYNGSFPRVFAMSNGAPSPFKMNLNEYMVTLEKPLGIRFALSIDGKIFVHALKRGGNAEKSRIIMVGDTLKNASESSGGKIIQINDLSDTQKMLKEKSGSFSLILERPFSTFPIQQLLFSDFDILFNRGRVPIASWNKNVIARATTDSDGNSGFAVFSSKFSTLQGWNILNQNEAIKPQKQKNSLLPPIKQLISIFSEEESGDGEWGHGSFPLEEYTKALDRSKGEQYYNHFLGMRYSKITEQIYVGSCIQTEADVQTLAKMGVTAVLNFQSGIDAENWGINSKLINESCQRLDILMVNYPIREGNSYDLRKKLPFCVGLLLRLLKKSHRVFITCTTGFDRSPSCVIAYLHWMTDTSLQAAYNFVTSLHICKPDRPAIAWATWDLIALVENGGHDGPATHAVTFVWNGQEGEEVILVGDFTGNWKEPVRATHKGGPRYEVELRLSQGKYNYKYIVNGQWRHSTSSPAERDEWGNVNNVIEIGDTASVRPANQQHKKNNGHLANKILFFLIKSAIFINNHNAINSEYAFISLFLQFMVFACSDSRVCPSHVLNFQPGEAFVVRNVANIVPPFNKLKYSGPGSAIEYAVLHLKVEQIVVIGHSACGGIKGLLSFPDEGPTSTDFIEDWVKVVTPAKKKVLGKHPDAQFSELCGHCEREAVNVSIGHLLTYPFVRDGVLNKTLALKGGYYDFVKGSFELWSLEYGLSSPLHV 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18196124 18204698 - Bpe009345.2 Bpe02g01492 99641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01492 753 CDD E_set_AMPKbeta_like_N 446 525 - -
Bpe02g01492 753 Pfam Glycogen recognition site of AMP-activated protein kinase 446 527 IPR032640 -
Bpe02g01492 753 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 584 591 IPR015892 GO:0004089|GO:0008270|GO:0015976
Bpe02g01492 753 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 272 414 IPR029021 -
Bpe02g01492 753 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 628 648 IPR015892 GO:0004089|GO:0008270|GO:0015976
Bpe02g01492 753 Gene3D Protein tyrosine phosphatase superfamily 273 543 IPR029021 -
Bpe02g01492 753 SUPERFAMILY beta-carbonic anhydrase, cab 578 749 IPR036874 GO:0004089|GO:0008270
Bpe02g01492 753 ProSiteProfiles Dual specificity protein phosphatase domain profile. 280 438 IPR020422 GO:0006470|GO:0008138
Bpe02g01492 753 ProSiteProfiles PDZ domain profile. 72 153 IPR001478 GO:0005515
Bpe02g01492 753 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 541 - -
Bpe02g01492 753 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 541 IPR030066 GO:0005983
Bpe02g01492 753 SUPERFAMILY E set domains 444 526 IPR014756 -
Bpe02g01492 753 CDD DSP_laforin-like 279 424 IPR045204 GO:0019203|GO:0046838
Bpe02g01492 753 SMART dsp_5 280 435 IPR020422 GO:0006470|GO:0008138
Bpe02g01492 753 SMART Pro_CA_2 578 742 IPR001765 GO:0004089|GO:0008270
Bpe02g01492 753 CDD beta_CA_cladeB 579 741 IPR045066 GO:0004089|GO:0008270
Bpe02g01492 753 SUPERFAMILY PDZ domain-like 50 158 IPR036034 GO:0005515
Bpe02g01492 753 Pfam Carbonic anhydrase 580 737 IPR001765 GO:0004089|GO:0008270
Bpe02g01492 753 Pfam Dual specificity phosphatase, catalytic domain 288 416 IPR000340 GO:0008138|GO:0016311
Bpe02g01492 753 Gene3D Immunoglobulins 433 529 IPR013783 -
Bpe02g01492 753 Gene3D Carbonic anhydrase 568 745 IPR036874 GO:0004089|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01492 - - - jre:108992878 803.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01492 Bpe-Chr2:18196124 Bpe13g00496 Bpe-Chr13:12370981 3.03E-73 dispersed
Bpe13g01462 Bpe-Chr13:19908098 Bpe02g01492 Bpe-Chr2:18196124 8.55E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1354 . . Bda01g01275 . Bpe02g01492 . . . Cmo14g00665 Cmo11g01691 Cma11g01430 Cma14g00650 Car11g01376 Car14g00590 . Cpe03g00563 . . . . . . . . Cla10g01352 Cam10g1257 Cec10g1433 Cco10g1407 Clacu10g1410 Cmu10g2180 Cre10g1563 . . Cone2ag0129 Cone16ag0926 . Csa05g02338 Chy04g01458 Cme04g01888 . Blo18g00336 . . . . Bma01g00979 . . . . . . . . . . Bhi11g01650 . . . Hepe02g1824 . . . . . . . . . . Csa03g03938 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01492 Bpe_Chr02 FPKM 36.948769 37.656155 20.202932 21.713051 29.728949 29.121826 25.965822 12.06925 14.711909 12.182182