Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01559 ATGAGGATTTGGTGTTGCTCATGCTTTACTGCGGGAGAAGACGAAGCGGAAGAGGAACGATTTAGAGAGATTGTGATGAGGGAGGGTGTCGAAAATGAGGGAAATCCCGAGACTATTGTTGGTAATGACGATGAATTCGAAGATGTTGGTAGATTAGGGCTTGCTGTTCACAGGCCCGCGCCTGATGACCAAGCTCAGTTGAGATTGTTTGAGGAGATGGTTAGAGCAACGCGAGGTCATTGTGAAGTCGGATTAAGTTCCCATGTCCTTAACCCATGGAAGTTTCAGTTTTGGGTTTCAAGTCAAGCTGAGGGTGAAAGCAGTAACAGTTCGGCTCCAGTCTCAGCAATTCGGGTGGGAGGAAATGGCGATGAGGAGTGTGATCTTGATCCTCACCACAAGCGTGCCAAAGTTCACTCTGATTCTTGCATGTGCTCCTATTCTCCCACATTTCCTTCAGATGCTGGAAACACTTCGTGCATGGAGTTGAATCTTGATATTAGGCATGGATCACTAGTTACATCTAAAAGTGAGAGTGTCTATCAAACAATTACATTGATTAATGCTGGTGGTGGCTTTCCTTTCGGCTCCAGCAGTGGGAAAGATGAGATTAAGGGCATTAAAACGGAGGATTTTGAAATTCGGATGGATCTCACAGACGATCTATTGCATATGGTTTTCTCATTCCTGGACCACATAAATCTTTGTCGAGCTGCCATTGTATGTAGACAATGGAGAGTGGCCAGTGCTCATGAAGATTTCTGGAGATGTTTGGATTTTGAGAATAGAAACATATCTGTTGACCAATTTGAGGACATGTGTAAGCGATACCCTAAGGCTACAGAAGTTAATATATCTGGTGCTCCTGCTATTCACTTGCTTGTTATGAAGGCAGTAGCTTCATTGAGATTTTTTTTGTTGGCACTTACCCGTTTGTACTATTTTAGAAATCTGGAAATCTTAACTTTGGGAAGAGGTCTATTGGGGGACACATTTTTTCATGCCTTAGCAGATTGTCAGACATTGAAGAAGTTGACTGTTAATGATTCTACCCTTGGTAATTGTATTCAAGAAATACCTATAAACCATGATCGTTTGCGTCATCTTTATTTGACAAAATGTCGTGTCATACGCATATCTGTCAGGTGCCCACAACTTGAGACATTGTCTTTGAAACGAAGCAACATGGCACAAGCTATACTCAATTGCCCTCTTCTGCGCGATTTAGATATAGGCTCTTGCCACAAGCTTTCTGATGCTGCAATTCGTTCAGCTGCAACATCATGTCCTCAGTTAGAGTCTCTGGATGTGTCAAATTGTTCGTGTATTAGTGATGAAACAATACATGAAATAGCTAGCACTTGTGCAAATCTCCATATTTTAAATGCTTCATACTGCCCTAATATATCTCTGGAGTCTGTTGCGCTGGCAATGTTGACTGTTCTTAAGCTTCATAGCTGTGAGGGTATTACTTCAGCATCAATGTTAGCAATATCTCGTTGTTCTATGCTTGAGGTTTTAGAGCTTGACAATTGTAGCCTTTTAACCTCTGTGTCCTTGGATCTCCAACGCTTGCAGAGTATTCGTCTGGTTCATTGTCGCAAATTTGCTGATCTAAATTTACGGAGTCTAGTTCTATCGTCCATTATGGTGTCTAATTGTCCTGCCCTTCACCGCGTCAACATCACATCCAATGCACTTCAAAAATTAGCATTGCAGAACCTAGAAAGCTTAACCACCTTGGCTTTGCAATGCCAAAGTTTACAGGAAGTAGATCTCACTGACTGTGAATCTCTCTGGAATTCTATATGTGATATTTTTGGTGATGATGGCGGGTGCCCGATGCTGAAATCTTTAGTTCTTGATAACTGTGTGAGTTTGACAGCAGTCCAATTCTGCAGTACCTCCTTAGTTAATCTTTCTCTTGTTGGCTGTCGAGCCATCACCACTCTCCAGCTTACATGCCCCTTCCTCGAGAGAGTGTGTTTAGATGGATGTGATCATCTTGAAGTGGCGTCATTTTTTCCAGTTGGTCTAAAGTCTCTTAATCTGGGTATATGTCCCAAATTGAATGAACTTAGAATTAAAGCCCCTCATATGGCTATACTCGAGCTGAAAGGCTGTGGAGGGTTATCTGAAGCATCCATTGATTGTCCTCTGTTATCATCACTAGATGCTTCCTTTTGCAGCCAACTGAGGGATGACTGCTTGTCTGCAACGACTGCTTCGTGTCCGCTGATTGAGTCTTTAATATTGATGTCTTGTCCATCAGTTGGTTCAGATGTTCTGTACTCGTTGGGTCATCTTCCACGATTAATCATTCTTGACTTATCTTATACATTTTTGATGAACTTGCATCCTGTCTTCGAGTCTTGTTTGCAACTTAAGGTGTTGAAGCTACAAGCTTGTAAGTACTTAACTGATTTATCACTGGAACCTCTTTACAAAGAAGGTGCTCTTCCAGCTTTGCAAGAGTTGGACTTATCTTATGGGACTTTCCGCCAGTCTTCTATAGAGGAGCTTCTTACTTGCTGCACCCATCTCACGCATGTTAGCCTGAATGGCTGTGTTAATATGCATGATCTGAATTGGAGCTACCATGACAGACTGTCGGACTTGAATGGTGTAGATATATCATCTTGTCAGTTTTCTGTCACAGATGTCATGGAGCCAACTGAGCAAGCCGATCGTTTACTGCAGAACCTCAACTGTGTTGGCTGTCCAAATATTAGGAAAGTTCTTATTCCCCCAACTGCACGGTGTTCCCATCTGTCATCTCTGAACCTCTCTCTATCTTCCAATTTGAAGGAAGTTGATGTTGCTTGCTTGAATCTGTGCTTTCTCAACTTGAGGTTTGAATCTATCTCTGCTTGTGAGTTGAAGTTTATCCTAGATTTCTGCGACTATAAATTCCTCAATTTGTCTTTCAGCAACTGTTGCTCCTTGCAAGTTTTGAGATTGGACTGTCCAAAATTGAGTAGTCTCTTTCTTCAGTCTTGCAATATCGACGAAGAGGCTGTTGAAACTGCCATAGCCAAATGTAGCATGCTTGAGACCCTGGACGTCCGTTTCTGTCCCAAAATTTCCTCGATGAGCATGATTCAAATTCGGATGGCATGCTCAAGTTTGAAGCGGATCTTCAGCAGCCTCCTGTCTTCCTCATGA 3165 42.37 MRIWCCSCFTAGEDEAEEERFREIVMREGVENEGNPETIVGNDDEFEDVGRLGLAVHRPAPDDQAQLRLFEEMVRATRGHCEVGLSSHVLNPWKFQFWVSSQAEGESSNSSAPVSAIRVGGNGDEECDLDPHHKRAKVHSDSCMCSYSPTFPSDAGNTSCMELNLDIRHGSLVTSKSESVYQTITLINAGGGFPFGSSSGKDEIKGIKTEDFEIRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWRVASAHEDFWRCLDFENRNISVDQFEDMCKRYPKATEVNISGAPAIHLLVMKAVASLRFFLLALTRLYYFRNLEILTLGRGLLGDTFFHALADCQTLKKLTVNDSTLGNCIQEIPINHDRLRHLYLTKCRVIRISVRCPQLETLSLKRSNMAQAILNCPLLRDLDIGSCHKLSDAAIRSAATSCPQLESLDVSNCSCISDETIHEIASTCANLHILNASYCPNISLESVALAMLTVLKLHSCEGITSASMLAISRCSMLEVLELDNCSLLTSVSLDLQRLQSIRLVHCRKFADLNLRSLVLSSIMVSNCPALHRVNITSNALQKLALQNLESLTTLALQCQSLQEVDLTDCESLWNSICDIFGDDGGCPMLKSLVLDNCVSLTAVQFCSTSLVNLSLVGCRAITTLQLTCPFLERVCLDGCDHLEVASFFPVGLKSLNLGICPKLNELRIKAPHMAILELKGCGGLSEASIDCPLLSSLDASFCSQLRDDCLSATTASCPLIESLILMSCPSVGSDVLYSLGHLPRLIILDLSYTFLMNLHPVFESCLQLKVLKLQACKYLTDLSLEPLYKEGALPALQELDLSYGTFRQSSIEELLTCCTHLTHVSLNGCVNMHDLNWSYHDRLSDLNGVDISSCQFSVTDVMEPTEQADRLLQNLNCVGCPNIRKVLIPPTARCSHLSSLNLSLSSNLKEVDVACLNLCFLNLRFESISACELKFILDFCDYKFLNLSFSNCCSLQVLRLDCPKLSSLFLQSCNIDEEAVETAIAKCSMLETLDVRFCPKISSMSMIQIRMACSSLKRIFSSLLSSS 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18592132 18598223 + Bpe009411.1 Bpe02g01559 99708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01559 1054 PANTHER OS10G0396666 PROTEIN 125 1014 IPR044703 GO:0010252|GO:1905393
Bpe02g01559 1054 SUPERFAMILY F-box domain 216 287 IPR036047 GO:0005515
Bpe02g01559 1054 SUPERFAMILY L domain-like 315 670 - -
Bpe02g01559 1054 Gene3D Ribonuclease Inhibitor 473 783 IPR032675 -
Bpe02g01559 1054 Gene3D Ribonuclease Inhibitor 784 1053 IPR032675 -
Bpe02g01559 1054 SUPERFAMILY RNI-like 582 812 - -
Bpe02g01559 1054 SUPERFAMILY L domain-like 707 1044 - -
Bpe02g01559 1054 SMART fbox_2 218 258 IPR001810 GO:0005515
Bpe02g01559 1054 Gene3D Ribonuclease Inhibitor 210 472 IPR032675 -
Bpe02g01559 1054 Pfam F-box-like 220 260 IPR001810 GO:0005515
Bpe02g01559 1054 PANTHER OS10G0396666 PROTEIN 125 1014 - -
Bpe02g01559 1054 SMART LRR_CC_2 792 817 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 1014 1039 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 989 1013 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 921 946 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 403 428 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 476 501 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 655 680 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 718 743 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 554 578 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 522 547 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 429 454 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 613 643 IPR006553 -
Bpe02g01559 1054 SMART LRR_CC_2 744 769 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01559 - - - qsu:111997858 1387.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01559 Bpe14g00280 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01559 Bpe-Chr2:18592132 Bpe04g01176 Bpe-Chr4:13378869 5.90E-08 dispersed
Bpe14g00280 Bpe-Chr14:2801640 Bpe02g01559 Bpe-Chr2:18592132 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01559 Bpe_Chr02 FPKM 23.306967 27.256273 31.969944 31.693401 24.838799 28.107042 25.355516 18.63773 17.90918 20.030638