Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01564 ATGATCCCTTCATTTCTGAGCGTGGTCTCTCTCTACAGCCGCTACCTTTCTCGCTGCTTCACTTCTGCTGGTCTTATTCGACAGACAGTCGACATCGACGATGAAACGACCATGGCCTTTTGGGGTCCCAAACCCAACCCTAAACGAACCGAGGAAAAAACTCCTCTCATCTTGATTCATGGCTTTGGTCCTATGGCGATCTGGCAATGGCGGAATCAAGTAGAGTTCTTCGCGCCTGAATTCGACGTCTATGTTCCTGATCTCGTCTTCTTCGGCGACTCCACTACCAGGTCATCGGAGAGAACAGAACTTTTTCAGGCCGTTTCTGTCGGAAAGCTAGTAGAAAAGCTCGGATGGAAGAAATTTCACGTGATGGGCACTAGCTATGGCGGAATTATCACGTACCATGTGGCGAGGTTGTTGCCGGAGAGAGTGGAGAAGGTGATAATCGCCAGCTCAGCGATCAATAGAAGAAGGAAAGATATCGAGGCGTTACTCAGGAGAGCAAAAGTGGAGAGAATTGAGGATCTAATGCTACCATCGACGGCGAAGGAGTTACGCCGGCTAATGGCGTTTGCTGCTTATAATCGCACGCTTGGAATGATACCGGATTTCGTCTTCAACGACTTCTTAAAAACGTTTTACTCGAAGAACAGGGAGGAGAAATTGGAGCTAATTAAGGGGCTGACGGTCGGAAGAGATGATACTGTGAATATTTCTCCTCTTCATCAGCAGGAGGTTTTGATTATAATGGGAGAGCAGGACCTTCTCTACCCATTGGAGATAGCTACTGAGCTCACACAGATTATTGGAGAAAAAGTCAAACTAGAGGTGATTAAAAAGTCAGCCCACATTCCCCAGATTGAATCCGCAAAGCAATTCAACTCCATTGTCCAAAGCTTTCTCCGTGGCTCCTGA 918 47.28 MIPSFLSVVSLYSRYLSRCFTSAGLIRQTVDIDDETTMAFWGPKPNPKRTEEKTPLILIHGFGPMAIWQWRNQVEFFAPEFDVYVPDLVFFGDSTTRSSERTELFQAVSVGKLVEKLGWKKFHVMGTSYGGIITYHVARLLPERVEKVIIASSAINRRRKDIEALLRRAKVERIEDLMLPSTAKELRRLMAFAAYNRTLGMIPDFVFNDFLKTFYSKNREEKLELIKGLTVGRDDTVNISPLHQQEVLIIMGEQDLLYPLEIATELTQIIGEKVKLEVIKKSAHIPQIESAKQFNSIVQSFLRGS 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18632960 18634261 - Bpe009416.2 Bpe02g01564 99713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01564 305 Pfam alpha/beta hydrolase fold 55 290 IPR000073 -
Bpe02g01564 305 PRINTS Alpha/beta hydrolase fold signature 124 137 IPR000073 -
Bpe02g01564 305 PRINTS Alpha/beta hydrolase fold signature 138 151 IPR000073 -
Bpe02g01564 305 PRINTS Alpha/beta hydrolase fold signature 247 261 IPR000073 -
Bpe02g01564 305 PRINTS Alpha/beta hydrolase fold signature 80 95 IPR000073 -
Bpe02g01564 305 PRINTS Epoxide hydrolase signature 279 301 IPR000639 GO:0003824
Bpe02g01564 305 PRINTS Epoxide hydrolase signature 138 151 IPR000639 GO:0003824
Bpe02g01564 305 PRINTS Epoxide hydrolase signature 80 95 IPR000639 GO:0003824
Bpe02g01564 305 PRINTS Epoxide hydrolase signature 124 137 IPR000639 GO:0003824
Bpe02g01564 305 PRINTS Epoxide hydrolase signature 245 261 IPR000639 GO:0003824
Bpe02g01564 305 Gene3D alpha/beta hydrolase 47 303 IPR029058 -
Bpe02g01564 305 SUPERFAMILY alpha/beta-Hydrolases 27 302 IPR029058 -
Bpe02g01564 305 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 5 302 - -
Bpe02g01564 305 PANTHER SI:DKEY-122A22.2 5 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01564 - - - csv:101211265 386.726
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01564 Bpe14g00283 CCT
Bpe02g01564 Bpe14g00283 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01564 Bpe-Chr2:18632960 Bpe14g00453 Bpe-Chr14:4129088 3.33E-58 dispersed
Bpe07g00432 Bpe-Chr7:4898630 Bpe02g01564 Bpe-Chr2:18632960 1.53E-41 transposed
Bpe14g00283 Bpe-Chr14:2835048 Bpe02g01564 Bpe-Chr2:18632960 8.42E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g172 . . . . Bpe02g01564 . . . Cmo05g00422 . . Cma05g00410 . . Sed11g0859 . . Bhi04g01523 Tan02g1575 Cmetu03g2273 . Hepe08g1441 . Lcy13g2228 . . . . . . . . . . Cone20ag0294 Lsi04g02234 . . . Blo17g00271 Blo18g00258 Bda01g01351 . Bpe14g00283 . Bma01g00907 . . . . . . . Car05g00345 Cpe11g00350 . . . . . . . . Cla08g00981 Cam08g1430 Cec08g1008 Cco08g1131 Clacu08g1135 . Cre08g0919 . . Chy03g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009871 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01564 Bpe_Chr02 FPKM 12.703595 13.587584 15.259762 14.690876 18.674549 16.674963 20.899204 11.056218 11.266106 13.52494